Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02299 ATGGCGGAATCCGGTTACCAAAACGGCGTCGAGTTTTGCATCGGCGCCCGTAGTAACAGTAATAATGATCCGTTGAATTGGGGAGCGGCAGCGGAGTCGTTGAAGGGAAGCCATTTGGAAGAAGTGAAGCGGATGGTAGAGGAGTACCGGCGTCCGGTGGTCAAACTGGGAGGAGAGACTCTGACGATATCCCAGGTGGCTGCGATCGCCTCCAGGGATTCCGGCGTGGTGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGGGTTGAGGCGAGCAGTAAGTGGGTGATGGACAGCATGAATCAAGGAACGGATAGCTACGGCGTCACCACCGGCTTTGGTGCCACCTCCCACCGCCGGACTAAAGAAGGCGGCGCTCTGCAGAGGGAGCTCATACGATTTTTGAACGCAGGAGTATTTGGACGTGGCACTGAATCGAGTCACACTTTGCCTCATTCATCAACAAGAGCAGCCATGTTAGTTAGGATCAACACCCTCCTTCAAGGCTACTCGGGCATTAGGTTTGAAATTTTGGAAGCTATAACCAAACTTCTCAACCATAATGTCACTCCATGTTTGCCTCTTCGAGGAACAATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTTACTGGTCGATCAAATTCGAAAGCTATTGGCCCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCAAACAAGCCGGTATTCCCTCTGGGTTCTTTGAGTTGCAACCTAAAGAAGGGTTGGCTCTTGTCAATGGAACTGCCGTTGGTTCGGGGTTAGCCTCGATTGTTCTATTTGAGGCAAACATTTTAGCAGTTTTAGCTGAAATTATGTCTGCTATTTTTGCTGAGGTCATGCAAGGTAAGCCTGAATTTACCGATCATTTGACTCATAAGTTGAAACATCATCCTGGTCAGATTGAGGCAGCTGCAATCATGGAACACATTTTGGATGGAAGTTCTTACATGAAAACAGCTAAGAAGTTGCATGAAATGGATCCTCTCCAAAAGCCTAAACAAGATCGCTATGCCCTTCGCACTTCACCCCAATGGTTGGGTCCATTGATTGAAGTTATTCGATTCTCTACAAAGTCTATTGAGAGGGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACACGGAGGCAACTTCCAAGGAACACCAATTGGAGTCTCGATGGACAACACACGCTTGGCCATTGCTTTGATTGGTAAGCTCATTTTTGCTCAATTTTCTGAGCTTGTTAATGATTTTTACAACAATGGCTTGCCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTAGATTATGGACTCAAAGGTACCGAAATTGCTATGGCTTCCTATTGCTCCGAGCTTCAATATTTGGCAAATCCAGTAACAAATCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATCTCCTCGAGAAAAACAGAAGAAGCTATTGACATTTTGAAACTCATGTCTTCAACATTTTTAGTAGCACTTTGTCAAGCAATTGACTTAAGGCATTTGGAAGAAAATCTAAAGAGCACAGTAAAGAACACAGTAAGCCAAGTGGCCAAGAAGATCCTTACCGCTGGTGCTAATGGAGCTCTCCACCCGTCTAGATTTTGTGAGAAGGATTTACTCAAAGTTGTTGATAGAGAATACACATTTGCTTATATTGATGACCCATGCAGTGCCACTTATCCATTAATGCAAAAGTTTAGACAAGTTCTTGTAGAGCATGCACTTGCAAATGGAGAAGACGAGAAGAACACCAATAGTTCAATCTTTCAAAAGATACATGTTTTCGAAGAGGAACTAAAAGTTGTTTTACCTAAAGAGGTAGAAAGTGCAAGGTCTGCTTATGAAAATGGGAACCCTACAGTTCAAAATCAAATTAAGAAATGTAGATCATATCCACTCTACAAGTTTATAAGAAAAGAGTTAGGAACCGAGTTGCTTACAGGAGAGAAGGCAAAATCTCCAGGAGAAGTGTGCGAAAAAGTGTTCACAGCTTTATGTCAAGGAAAGATGATCGATCCAATCTTAGAGTGTTTAAAGGAATGGAATGGTGCTCCAATTCCTATTTGCTAA 2145 43.54 MAESGYQNGVEFCIGARSNSNNDPLNWGAAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTISQVAAIASRDSGVVVELSESARGGVEASSKWVMDSMNQGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGRGTESSHTLPHSSTRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRSNSKAIGPNGESLDAKEAFKQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLAEIMSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIALIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGLKGTEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTEEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVSQVAKKILTAGANGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKFRQVLVEHALANGEDEKNTNSSIFQKIHVFEEELKVVLPKEVESARSAYENGNPTVQNQIKKCRSYPLYKFIRKELGTELLTGEKAKSPGEVCEKVFTALCQGKMIDPILECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29979729 29982995 - MELO3C014229.2.1 Cme08g02299 336562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02299 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Cme08g02299 714 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 19 714 - -
Cme08g02299 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Cme08g02299 714 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cme08g02299 714 Gene3D - 14 260 IPR024083 -
Cme08g02299 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Cme08g02299 714 Gene3D - 527 648 IPR023144 -
Cme08g02299 714 PANTHER HISTIDINE AMMONIA-LYASE 19 714 IPR001106 -
Cme08g02299 714 CDD PAL-HAL 59 524 IPR001106 -
Cme08g02299 714 Pfam Aromatic amino acid lyase 61 536 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02297 Cme-Chr8:29961856 Cme08g02299 Cme-Chr8:29979729 0 dispersed
Cme08g02299 Cme-Chr8:29979729 Cme11g01812 Cme-Chr11:26303336 0 dispersed
Cme08g02298 Cme-Chr8:29972621 Cme08g02299 Cme-Chr8:29979729 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02299 K10775 - csv:101217907 1363.98