Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02302 ATGATTACGTTTATGGATTCGAAAGAGAAACTGAAAGAGGTGGAGAAATGTTTAGATCCTCAGTTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGAGTTTTCTATTTTCCACAAGGTCATGCTGAGCATTCTTGTGCGCCAGTTGATTTCAGGAACTGTCCTAAGGTTCCTTCATATACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTTGCGGATCCTGACACTGATGAGGTATTTGCCAAACTTAGGTTGATTCCCATAAATGGAAGCGAACTAGATTTTGAAGATGACGGAATTGGAAGGCTTAATGGGTCCGAACAGGATAAACCAACTTCATTTGCAAAGACACTGACTCAATCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCGGTTGGACTATTCTGCTGATCCACCTGTTCAAACCATTCTTGCTAAGGATGTTCATGGGGAGACATGGAAATTCAGGCACATTTATAGAGGGACGCCTCGCCGGCATCTTTTGACTACTGGCTGGAGTACTTTTGTTAACCATAAGAAGCTCGTTGCAGGTGATTCCATTGTTTTCTTAAGGGCAGAAAACGGAGATCTCTGCGTTGGGATTAGACGGGCGAAGAGAGGAATCGGTGATGGACCGGAGTCATCGTGTGGATGGAATCCGGCAGGGGGTAACTGTGCTGTTTCGTATGGAGCATTCTCCGCTTTTTTGAGGGAAGATGACAACAGATTGACGAGGTCTGCTAATGGCATGAATGGAAATGGAAGTCTTATGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTAAACTTGCTTCAAATGGACAACCCTTTGAAATAGTATTCTATCCAAGAGCTAGTACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTTGAAACCGAGGACTCTTCACGAATTAGTTGGTTCATGGGTACCATCAATTCAGTTCAGGTTGCAGACCCACTGCGCTGGCCTGAATCACCATGGAGGCTTCTTCAGGTTACTTGGGATGAACCTGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTTGAATTGGTGTCGAACATGTCTCCAATTCACCTTGCCCCTTTCTCACCTCCAAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTTGATAATCAACCTCCTGTGCCATCGTTTTCTAGTTATCTCCATGGGACTGGCAGCCCCTTTGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTTCATCTCAGTAAACTGCAGTCAGGTCTGTTTTCGATTGGTTATCGATCACTGGATCCAGCTGCTGGATCAACTAGACTTTCTGGTAATATAATGACTGAAAAACCAAGTATGAGTGAAAACGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCTTCAAAGAAATTTGATGGCGTAAAGACTCCTCAGCTAATACTTTTTGGCCGACCCATACTTACAGAATTGCAGATGTCTCAAAGCTTCTCTGGTGATACGGTTTCTCCAGTAGGTACTGGAAATAGTTCGTCAGATGGAAACGGAGACAAAATGACAAATCTCTCCGATGGCTCTGGATCTGCTTTACATCAACAAGGTCTACCAGAAGGCTCGGCTTGCGAAAATTTCCAGTGGTACAAGGACAATCGCCAAGAAATCGACCCAAACTTGGATACCGGCCACTGTAAAGTCTTTATGGAGTCGGAAGATGTAGGTCGCACTCTCGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTATAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAACCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCATGTTGGTGACGAACAATTCAGTGACTTCATCAAGACAGCAAGAAGATTGACAATTCTAACAGATTCAGGAAGTAACAACGTAGGAGCTTAG 2097 44.87 MITFMDSKEKLKEVEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHSCAPVDFRNCPKVPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGPESSCGWNPAGGNCAVSYGAFSAFLREDDNRLTRSANGMNGNGSLMGKGKVKPESVIEAAKLASNGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPPVPSFSSYLHGTGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFSIGYRSLDPAAGSTRLSGNIMTEKPSMSENVSCLLTMAHSTQASKKFDGVKTPQLILFGRPILTELQMSQSFSGDTVSPVGTGNSSSDGNGDKMTNLSDGSGSALHQQGLPEGSACENFQWYKDNRQEIDPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30020233 30024572 - MELO3C014232.2.1 Cme08g02302 336565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02302 698 PANTHER AUXIN RESPONSE FACTOR 6 689 - -
Cme08g02302 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme08g02302 698 MobiDBLite consensus disorder prediction 550 585 - -
Cme08g02302 698 Gene3D - 118 222 IPR015300 -
Cme08g02302 698 Gene3D - 324 398 - -
Cme08g02302 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme08g02302 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cme08g02302 698 ProSiteProfiles PB1 domain profile. 612 692 IPR000270 GO:0005515
Cme08g02302 698 Gene3D - 610 696 - -
Cme08g02302 698 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cme08g02302 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cme08g02302 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 226 IPR015300 -
Cme08g02302 698 MobiDBLite consensus disorder prediction 550 586 - -
Cme08g02302 698 SMART B3_2 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01275 Cme-Chr3:22349886 Cme08g02302 Cme-Chr8:30020233 0 dispersed
Cme08g02302 Cme-Chr8:30020233 Cme11g01803 Cme-Chr11:26202658 0 dispersed
Cme08g02302 Cme-Chr8:30020233 Cme12g01152 Cme-Chr12:19599255 2.64E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41882 PF02362 B3 1.50E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02302 - - csv:101217039 1409.82