Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02307 ATGGAGACCAATGACCACAATAAGGTTATTCTGATCAATGGCGAAGCTGAGAGGAGGAGGAACAGACGGAGAAGGAAAGGGTTGGGGATATTGTCTTGTAATTCTGATGAAGATTATGATCATGAGGTGAAGGGAATGATACTAGATCCAACTTTGCCCATATTAAACAAATGGAATAGGGTTTTTCTAGTGGCTTCTCTAGTCTCACTATTTGTTGACCCCATCTTCTTTTTCCTACCGGTGGTGAACGCGGAGGACGGGTGCATCCAAATGAGTGCAGAATTGGGTGTGGCGTTGACAGTGGTCCGATCCATGGCGGATGTGTTCTACGTAGCACACATACTCATTAGGTTTAGGACAGCTTATGTAGCTCCCTCCTCCAGAATCTTTGGGAGAGGAGACCTCGTGATTCACCCTTCTAAGATCGCAGCAAACTATCTTGGTTGCGAGTTTTGGCTTCATTTTGCTGCTGCATTACCTCTTCCACAGTACATGTTGAGGTTGTATCTCATCTTCCCTTTATCTGATCAAATCATTAAGGCCACTGGAGTTCTGATGAAAACAGCTTGGGTTGGAGCTGTTTATAACCTAATGCTCTTTATGCTAGCAAGCCATGTCTTGGGGTCGTGTTGGTACCTTTTATCCATAGGAAGACAAATGGAATGCTGGAAAAAAGTGTGCAATTTGGGGCATTACTTGGGTTGTGAATATGAGCATTTTTATTGTAAAGCTGCACAGCAAAGAGATCATCCTGCTTGGTGGTTTCAAATTAAAGCAACCAATATCTCAAATTTATGTAATCCAAGTGCTACCAGTTTCTTCAACTTTGGGATTTTTTCAGATTCTTTTGCTTCAACTTCTTCCCCCTTCATCACTAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAACGTGGGAGAAATCAATTTCGCTATTGTCATTGCCATTCTTGGGTTGGTGCTTTTTGCTCTTCTCATTGGAAATATGCAAACATATCTCCAATCAACAACATTAAGACTAGAAGAATGGAGAAGAAGAAGAAGAGACACGGAGCAATGGATGCAACACAGACAATTACCAAATCAATTGAAACAATGTGTAAGAAATTATGAACAATTTCGATGGATAGCAACCCACGGCGTCGACGAACAACAAATTCTAAAGTCCCTTCCTCTCGATCTCCGACGACACATCAAACGCCATCTCTGTTTAGATCTCCTCCGTCAAGTTCCTCTGCTAGACGAAATGGAAGAAACAATGTTAGACGCTATTTGCGAGCGATTAAACCCCTATTTAATCACTTCCAACACCTATTTAATTCGAGAAGGTGACCCGGTTAACGAAATGTTGTTCATAATCCGTGGGTATTTGGATTCCCACACCACCAACGGCGGCCGGACTGGGTTCTTCAACTCAAGCCGCCTCGGGCCGAGTGATTTCTGCGGTGAGGAGTTGCTACCTTGGGCTCTGGTTGATGATCCTAGGGCCGCAGCGGTGTTCCCGTCGTCAACCAGGACGGTGAAGGCGGTGACGGAAGTGGAAGGGTTCGCGCTTGTGGCGGAGGATTTGAAGTTTGTGGCGGCGCAATTTCGGAAGCTGCATAGTAAACAGATTAGGAGTACGTTTAGGTTTTATTCGCATCAATGGCGAACTTGGGCGGCGTGTTTCATTCAGGCGGCGTGGTTTAGGTATAAGCGGCGGATGAAGAAGGAGGAAGAAGATGAGATTAATGTTGCGAGGAAGATGAATGTTGTTCATCATAGGTCGTTGGTGAAGCCACTTCAACTTGATTTCTCTGTTGAACATAGATGA 1812 44.37 METNDHNKVILINGEAERRRNRRRRKGLGILSCNSDEDYDHEVKGMILDPTLPILNKWNRVFLVASLVSLFVDPIFFFLPVVNAEDGCIQMSAELGVALTVVRSMADVFYVAHILIRFRTAYVAPSSRIFGRGDLVIHPSKIAANYLGCEFWLHFAAALPLPQYMLRLYLIFPLSDQIIKATGVLMKTAWVGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCNLGHYLGCEYEHFYCKAAQQRDHPAWWFQIKATNISNLCNPSATSFFNFGIFSDSFASTSSPFITSSLGQNLLTSSNVGEINFAIVIAILGLVLFALLIGNMQTYLQSTTLRLEEWRRRRRDTEQWMQHRQLPNQLKQCVRNYEQFRWIATHGVDEQQILKSLPLDLRRHIKRHLCLDLLRQVPLLDEMEETMLDAICERLNPYLITSNTYLIREGDPVNEMLFIIRGYLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALVDDPRAAAVFPSSTRTVKAVTEVEGFALVAEDLKFVAAQFRKLHSKQIRSTFRFYSHQWRTWAACFIQAAWFRYKRRMKKEEEDEINVARKMNVVHHRSLVKPLQLDFSVEHR 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30063052 30066595 - MELO3C014236.2.1 Cme08g02307 336570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02307 603 SUPERFAMILY Voltage-gated potassium channels 57 334 - -
Cme08g02307 603 Pfam Ion transport protein 58 339 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme08g02307 603 PANTHER PROTEIN CNGC15A 23 164 - -
Cme08g02307 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 163 581 - -
Cme08g02307 603 SMART cnmp_10 412 545 IPR000595 -
Cme08g02307 603 Gene3D Helix hairpin bin 340 403 - -
Cme08g02307 603 Gene3D Jelly Rolls 410 532 IPR014710 -
Cme08g02307 603 SUPERFAMILY cAMP-binding domain-like 341 535 IPR018490 -
Cme08g02307 603 PANTHER PROTEIN CNGC15A 163 581 - -
Cme08g02307 603 ProSiteProfiles cAMP/cGMP binding motif profile. 412 499 IPR000595 -
Cme08g02307 603 PRINTS EAG/ELK/ERG potassium channel family signature 202 212 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme08g02307 603 PRINTS EAG/ELK/ERG potassium channel family signature 325 334 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme08g02307 603 PRINTS EAG/ELK/ERG potassium channel family signature 307 318 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme08g02307 603 PRINTS EAG/ELK/ERG potassium channel family signature 114 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme08g02307 603 PRINTS EAG/ELK/ERG potassium channel family signature 375 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme08g02307 603 CDD CAP_ED 412 545 IPR000595 -
Cme08g02307 603 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02307 Cme-Chr8:30063052 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme08g02307 Cme-Chr8:30063052 Cme04g01904 Cme-Chr4:26747348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02307 K05391 - csv:101221856 1111.67