Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02309 ATGTCCAACAACATTGATGGAAGAAGCAATGTCAAGGACTACCAAGATCCACCTCCCGCTCCCCTCATCGACTCCGACGAGTTCTCTCAATGGTCATTTTACAGAGCCATTATCGCTGAGTTCGTTGCCACGCTTCTCTTCTTGTACATTCTTGTTCTCACTGTCATTGGCAATGCCAGACTCTCCGACACCAATATCTGCGGCGGCGTCGGCGCTTTAGGCATTTCCTGGGCCGTCGGCGGCATGATCTTCGTCCTTGTTTATTGCACTGCCGGAATTTCTGGTGGCCATATTAATCCGGCGGTGACGTTCGGTATGCTGTTAGCTCGAAAAATCTCCCTAGTCAGAGCTTTGTCTTACATTTTGGCTCAATGTTTGGGCGCAATTTGTGGATGTGGTTTAGCTAAATCATTACAACAGACTTATTACGTTCAGTACAACGGCGCAGCCAATATGGTGTCAGATGAGTACAGCATCGGCACCGGCTTAGCCGCAGAGATAATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGACCCCAAAAGAAACGCTAGAGATTCTCACGTCCCAGTTTTGGCACCACTCCCAATTGGGTTCGCTGTGATTATGGTTCATTTAGCTACCATTCCGATCACCGGCACCGGCATCAACCCAGCTAGAAGCTTAGGAGCTGCTGTGATCTTTAACAAAGCCAAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCATTCATTGGAGCTGCCATTGCTGCAATTTATCATGTAGTGATAATAAGGGCAGGAACCATTAAAGCTCTGGCTTCCTTCAGAAGTTCATCTGCTCTATAA 840 47.98 MSNNIDGRSNVKDYQDPPPAPLIDSDEFSQWSFYRAIIAEFVATLLFLYILVLTVIGNARLSDTNICGGVGALGISWAVGGMIFVLVYCTAGISGGHINPAVTFGMLLARKISLVRALSYILAQCLGAICGCGLAKSLQQTYYVQYNGAANMVSDEYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVIMVHLATIPITGTGINPARSLGAAVIFNKAKAWDHHWIFWVGPFIGAAIAAIYHVVIIRAGTIKALASFRSSSAL 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30079583 30081198 - MELO3C014238.2.1 Cme08g02309 336572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02309 279 Pfam Major intrinsic protein 27 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 276 IPR034294 -
Cme08g02309 279 SUPERFAMILY Aquaporin-like 28 263 IPR023271 -
Cme08g02309 279 Gene3D Glycerol uptake facilitator protein. 20 279 IPR023271 -
Cme08g02309 279 TIGRFAM MIP: MIP family channel proteins 39 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 CDD MIP 35 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PANTHER AQUAPORIN PIP2-4-RELATED 8 276 - -
Cme08g02309 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cme08g02309 279 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02309 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02309 Cme-Chr8:30079583 Cme11g01798 Cme-Chr11:26126094 9.71E-158 dispersed
Cme08g02309 Cme-Chr8:30079583 Cme08g02310 Cme-Chr8:30084894 4.03E-161 tandem
Cme11g00423 Cme-Chr11:4253427 Cme08g02309 Cme-Chr8:30079583 5.52E-18 transposed
Cme04g02532 Cme-Chr4:31581885 Cme08g02309 Cme-Chr8:30079583 1.10E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02309 K09872 - csv:101215604 534.643