Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02310 ATGTCTAAGGATCTTGAAGCCGGTGGATTCGCCGTCAAGGATTACCAAGACCCACCTCCAGCCCCATTGATCGACGCCGAAGAGTTAACTCAATGGTCTTTTTACAGAGCTATCATTGCCGAGTTCGTCGCCACTCTTTTGTTCTTGTACGTCACCGTTCTCACTGTCATTGGCTACAGTAGCCAATCCGACACCAAAAGCGGCGGCCAAATCTGTGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTTGGTGGCATGATCTTCGTCCTCGTTTACTGCACTGCTGGAATCTCCGGAGGGCATATTAACCCGGCGGTGACTTTTGGGTTGTTCTTGGCTCGGAAAGTATCTTTAATTAGAGCAATTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGCTGCGCTTTGGTGAAATCATTCCAGAAGGCTCTTTACAATGGATACGGAGGTGGAGCCAATTCTCTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCGGAGATTATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAATGCTAGAGATTCTCACGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACCGGCACTGGAATCAACCCAGCTCGAAGTTTTGGAGCTGCCGTGATCTATAACAAAGACAAGGCATGGGATGACCAGTGGATATTTTGGGTTGGACCCTTCATTGGAGCTGCGATTGCTGCAATTTATCATCAGATAGTGTTGAGGGCAGGAGCAGTTAAAGCTCTGGGTTCTTTCAGAAGTTCGACTGCCGTATGA 855 50.29 MSKDLEAGGFAVKDYQDPPPAPLIDAEELTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKSGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMAAQCLGAICGCALVKSFQKALYNGYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKAWDDQWIFWVGPFIGAAIAAIYHQIVLRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30084894 30086578 - MELO3C014239.2.1 Cme08g02310 336573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02310 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cme08g02310 284 Pfam Major intrinsic protein 28 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cme08g02310 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cme08g02310 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02310 284 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 2 281 - -
Cme08g02310 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 281 IPR034294 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02532 Cme08g02310 CCT
Cme04g02532 Cme08g02310 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01253 Cme-Chr1:15927926 Cme08g02310 Cme-Chr8:30084894 5.39E-155 dispersed
Cme04g02532 Cme-Chr4:31581885 Cme08g02310 Cme-Chr8:30084894 4.08E-162 dispersed
Cme08g02310 Cme-Chr8:30084894 Cme08g02312 Cme-Chr8:30098090 0 dispersed
Cme08g02309 Cme-Chr8:30079583 Cme08g02310 Cme-Chr8:30084894 4.03E-161 tandem
Cme08g02310 Cme-Chr8:30084894 Cme08g02311 Cme-Chr8:30088714 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02310 K09872 - csv:101215366 541.576