Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02311 ATGCCGAAGGATATTGAAGCTGGAGGGCATGGTGGGTTTAGTGGGAAGGATTACGAAGACCCACCGCCTGCGCCGTTGATCGACGCACATGAGTTTGCTAAGTGGTCATTTTACAGAGCCATTATAGCTGAGTTTGTTGCTACTCTTTTGTTCTTGTATGTTACTGTTCTTACCGTTATTGGGTATAAAGTTCAGAGTGATGTTAAGAATGGAGGGGAGATTTGTGGCGGCGTTGGAATTTTGGGTATTGCTTGGGCCTTTGGTGGCATGATTTTTGTCCTCGTTTACTGCACCGCGGGGATTTCTGGGGGACATATAAATCCGGCGGTGACTTTTGGGCTGTTTTTGGCTCGTAAGGTGTCGTTGGTGAGAGCCATATTGTACGTGGCGGCTCAGAGTTTAGGCGCCATTTGTGGCTGTGCATTGGTGAAGGCGTTCCAAAACGGTCATTACACCGAGTACGGTGGTGGAGCCAATTCCCTCGCCGACGGCTACAGCACCGGCACTGGATTAGCCGCTGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTCTTTTCCGCCACCGATCCCAAAAGAAATGCCAGAGACTCCCACGTCCCCGTTTTGGCGCCACTTCCAATTGGGTTCGCGGTGTTCATGGTTCATTTGGCCACGATTCCAATCACCGGAACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTTGTGTTCAACCGATCCAAGCCATGGGATGATCAATGGATATTTTGGGTTGGACCTTTCATTGGAGCTGCCATAGCTGCAATTTATCATCAATTCGTATTAAGAGCAGGAGCAGCAAAAGCTCTAGGATCGTTCTCAAGTTCTTGA 855 49.59 MPKDIEAGGHGGFSGKDYEDPPPAPLIDAHEFAKWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVKNGGEICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYVAAQSLGAICGCALVKAFQNGHYTEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNRSKPWDDQWIFWVGPFIGAAIAAIYHQFVLRAGAAKALGSFSSS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30088714 30090280 - MELO3C014240.2.1 Cme08g02311 336574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02311 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Cme08g02311 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Cme08g02311 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Cme08g02311 284 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g02311 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 283 IPR034294 -
Cme08g02311 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02311 284 PANTHER AQUAPORIN PIP2-1-RELATED 2 283 - -
Cme08g02311 284 TIGRFAM MIP: MIP family channel proteins 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02311 Cme-Chr8:30088714 Cme11g01798 Cme-Chr11:26126094 1.11E-168 dispersed
Cme08g02310 Cme-Chr8:30084894 Cme08g02311 Cme-Chr8:30088714 0 tandem
Cme08g02311 Cme-Chr8:30088714 Cme08g02312 Cme-Chr8:30098090 4.82E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02311 K09872 - csv:101216085 549.28