Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02312 ATGGCCAAAGATTCCGATGCCGGAGCCTTCGCCGCCAAGGACTACCACGACCCTCCACCGGCCCCTTTCATCGACCCCCACGAGTTTACTCAATGGTCATTTTACAGAGCCATCATCGCCGAGTTCATCGCCACTCTCCTCTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTATAGTAGCCAGTCCGACATCAAACATAACGGCCAAATCTGCGGTGGTGTCGGCATTCTTGGCATCGCTTGGGCTTTCGGTGGAATGATCTTCGTTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACATATCAATCCGGCGGTGACATTTGGGCTGTTTTTGGCTCGGAAAGTCTCGTTGGTGAGGGCTGTTCTGTACATGGTTGCTCAATGCCTTGGTGCTATTTGTGGATGTGCTTTGGTTAAATCGTTTCAAAAGGGTCTTTACATTCGTTACGGCGGTGGAGCCAATTCTCTCGCCGACGGCTACAGTACCGGCACTGGCTTAGCCGCTGAGATCATCGGAACTTTCGTTCTTGTCTACACTGTCTTCTCTGCTACAGATCCCAAGAGAAGCGCTAGAGATTCTCACATTCCAGTTCTAGCTCCTCTGCCAATTGGGTTCGCCGTGTTCATGGTTCACCTAGCCACCATTCCAGTCACCGGCACCGGTATCAACCCAGCTCGAAGCTTTGGTGCTGCGGTGGTTTTGAACGAGAGCAAGCCATGGAATGACCATTGGATATTCTGGGTTGGGCCATTCATCGGAGCTGCAATTGCTGCATTTTATCACCAATTTATTTTGAGAGCTGGAGCTGTCAAAGCGTTGGGATCTTTCAGGAGTACTCAAAGTGTTTGA 855 50.41 MAKDSDAGAFAAKDYHDPPPAPFIDPHEFTQWSFYRAIIAEFIATLLFLYVTVLTVIGYSSQSDIKHNGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMVAQCLGAICGCALVKSFQKGLYIRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVVLNESKPWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSTQSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30098090 30100328 + MELO3C014241.2.1 Cme08g02312 336575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02312 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 -
Cme08g02312 284 TIGRFAM MIP: MIP family channel proteins 40 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cme08g02312 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Cme08g02312 284 PANTHER AQUAPORIN PIP2-4-RELATED 6 281 - -
Cme08g02312 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02312 284 SUPERFAMILY Aquaporin-like 27 268 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01283 Cme-Chr3:22393800 Cme08g02312 Cme-Chr8:30098090 1.29E-161 dispersed
Cme08g02310 Cme-Chr8:30084894 Cme08g02312 Cme-Chr8:30098090 0 dispersed
Cme08g02312 Cme-Chr8:30098090 Cme10g00071 Cme-Chr10:533417 2.27E-168 dispersed
Cme08g02312 Cme-Chr8:30098090 Cme08g02314 Cme-Chr8:30107847 8.14E-149 proximal
Cme08g02311 Cme-Chr8:30088714 Cme08g02312 Cme-Chr8:30098090 4.82E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02312 K09872 - csv:101214884 567.0