Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02314 ATGTCTAAGGATCTTGATCCTGGTTTTCCCACCGGCGACTACTTCGATCATCCTCCGGCTCCCTTCTTCGACTCTGAAGAGCTCTTGCGGTGGTCCTTTTATAGGGCTGTTATTGCCGAGTTCATTGCTACTCTTTTGTTTTTGTATGTTGGAGTTCTTACTGTGATCGGAAGCCAAAGTCAGGATTCTGCCGCGGTATGCGGCGGCGTTGGTGTTCAAGGTATTGCTTGGGCGTTCGGCGGCACCATCTTTGTTCTCGTTTACTGCACCGCCGGCATTTCTGGAGGACATATAAATCCAGCGGTAACATTTGGTCTGTTCTTGGGTCGGAAAGTTTCATTGGTTAGAGCTGTGTTGTACATAATGGCTCAGTGTTTAGGAGCCATTTGTGGGTGTGGTCTAGTGAAATCATTAAAGAAGGCTAATTTCAATACCTTTAGCGGTGGAGCCACCGAACTCGCCGACGGCTTCAGCCCTAGTGCTGGTCTTGCTGCTGAGATCATCGGAACCTTTGTTCTTGTATACACTGTCTTCTCTGCTACCGATCCCAAGAGAAAAGCTAGAGATTCTCACGTTCCCGTTCTAGCGCCGCTCCCAATTGGGTTTGCGGTGTTCGTGGTGAATTTAGCGACGATTCCGGTGACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCAGCAGTGATGTTCAACAACCACAAAGCTTGGGATAACCATTGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCAATGGCTGCAACTTACCATGAATTTGTTTTGAGAGGAGGAGCAGCTAAGACCTTGAAATCCTTCAAAACTTCCTCAGTTTAA 837 48.63 MSKDLDPGFPTGDYFDHPPAPFFDSEELLRWSFYRAVIAEFIATLLFLYVGVLTVIGSQSQDSAAVCGGVGVQGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLVRAVLYIMAQCLGAICGCGLVKSLKKANFNTFSGGATELADGFSPSAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNNHKAWDNHWIFWVGPFIGAAMAATYHEFVLRGGAAKTLKSFKTSSV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30107847 30110462 + MELO3C014244.2.1 Cme08g02314 336577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02314 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 275 IPR034294 -
Cme08g02314 278 Pfam Major intrinsic protein 29 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 CDD MIP 35 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PANTHER AQUAPORIN PIP2-1 7 275 - -
Cme08g02314 278 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cme08g02314 278 Gene3D Glycerol uptake facilitator protein. 20 278 IPR023271 -
Cme08g02314 278 SUPERFAMILY Aquaporin-like 27 263 IPR023271 -
Cme08g02314 278 TIGRFAM MIP: MIP family channel proteins 39 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme08g02314 278 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02314 Cme-Chr8:30107847 Cme11g01798 Cme-Chr11:26126094 1.01E-144 dispersed
Cme12g01777 Cme-Chr12:24357524 Cme08g02314 Cme-Chr8:30107847 6.37E-35 dispersed
Cme08g02312 Cme-Chr8:30098090 Cme08g02314 Cme-Chr8:30107847 8.14E-149 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02314 K09872 - csv:101215842 555.829