Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02317 ATGAAGTTTCGCAGTCTTCTTTCTAGTTGTTGTTACTCTCCATCGCAGACAGCCATGGAAAACAGCCGCCACGATAGACAGGACAATGAGAGTTTTCGTGTGTACTCTTATAGCGAGCTTAAATCAGCCACCAATGGATTTAGTGGAGCGAATAAGGTTGGAGAGGGCGGATTTGGTACTGTTTACAAGGGTCGGCTTCGAGATGGCAGGAAGATTGCTGTGAAGGTGCTTTCTATTGAGGTAGAATCCATGAGAGGAGAAAGGGAGTTCATTGCTGAATTAACTTCACTTTCTAACATTAGACATGAAAATCTGGTTGAGCTTAAAGGGTTTTATGTTGATGGAAGCAACAGATATTTAGTCTATGATTACATGGAAAACAACAGCCTTGCATATGCTCTTCAGGGTGTGAGGGAAAATAGAATGAGACTTAGTTGGATAGCCAGAAAGGAAATTTTGATTGGAGTAGCTCGTGGGCTTGCCTATCTTCATGAGGAGGTTGAGCCACATATAGTTCATAGAGATATAAAAGCCAGCAATATACTACTCGACCATAATTTTAAGCCTAAAGTTGCGGATTTTGGATTGGCTAAGTTGTTGAGAGAGAACAGTTCTCATGTTAGTACTCGTGTTGCTGGCACAATAGGATACCTTGCTCCAGAATATGCTGTGAGCGGCCATTTGACACGAAAATCCGATATCTACAGCTTTGGGGTGTTGTTGTTGGAGATTGTTAGCGGAAGAGCAACTGTTGATTTTGATTTGGAACATGGTGAACACCATTTAGTTCAAAGGGTATGGGAACATTACAAGGCAAATGAGCTAGTAAAATTGATAGATCCCGTGCTTGACGCAGACTTCCGAGAAGAAGAAGCCGTTAGATTTATGAAGATTGGTCTACTCTGTGTGCAAGAAAACCCAACGAAACGACCACGGATGTCTCTTGCTGTAAGCATGTTGATAAAGGACACTGACCTTAATGAACACAATATTTCACAACCAGCACATATTATTGACTTCATGGACATTAAAATGGGTAAAGGAAACTCATCAACTAGCTTTTTCTCCAAGGTTTCCACAGCAAATAGCATGTAA 1095 41.28 MKFRSLLSSCCYSPSQTAMENSRHDRQDNESFRVYSYSELKSATNGFSGANKVGEGGFGTVYKGRLRDGRKIAVKVLSIEVESMRGEREFIAELTSLSNIRHENLVELKGFYVDGSNRYLVYDYMENNSLAYALQGVRENRMRLSWIARKEILIGVARGLAYLHEEVEPHIVHRDIKASNILLDHNFKPKVADFGLAKLLRENSSHVSTRVAGTIGYLAPEYAVSGHLTRKSDIYSFGVLLLEIVSGRATVDFDLEHGEHHLVQRVWEHYKANELVKLIDPVLDADFREEEAVRFMKIGLLCVQENPTKRPRMSLAVSMLIKDTDLNEHNISQPAHIIDFMDIKMGKGNSSTSFFSKVSTANSM 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30122970 30125127 - MELO3C014246.2.1 Cme08g02317 336580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02317 364 PANTHER RECEPTOR-LIKE KINASE 12 344 - -
Cme08g02317 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Cme08g02317 364 ProSiteProfiles Protein kinase domain profile. 47 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02317 364 Gene3D Transferase(Phosphotransferase) domain 1 125 338 - -
Cme08g02317 364 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
Cme08g02317 364 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Cme08g02317 364 SMART serkin_6 47 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02317 364 Pfam Protein kinase domain 50 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02317 364 SUPERFAMILY Protein kinase-like (PK-like) 30 328 IPR011009 -
Cme08g02317 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 344 - -
Cme08g02317 364 CDD STKc_IRAK 53 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01430 Cme-Chr7:20005968 Cme08g02317 Cme-Chr8:30122970 5.36E-129 dispersed
Cme08g02317 Cme-Chr8:30122970 Cme12g01365 Cme-Chr12:21574748 1.18E-111 dispersed
Cme08g02317 Cme-Chr8:30122970 Cme07g01380 Cme-Chr7:19355066 6.50E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65123 PF00069 Pkinase 5.40E-51 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02317 - - csv:101214642 697.582