Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02321 ATGTCTGGTATTGACTTTTCTGTTTCTTCTAATTGTATTGGAGAATTTGGTGATCATCATCGTCATCAACAGCAAACTTCTCAACTTTATCATAATCATCATCATCTTCTTCTTCCTCTGAACCCTAATCCTATTCCTAACCCTATTATTCAAAATGTTGATTCTTCTTCTTCTCTTCCTCCTTCTCTCCCCAAGAAGAAGAGAAATTTGCCAGGAAAACCAGATCCAGATGCAGAGGTAATTGCTTTATCTCCAAACACACTGATGGCAACAAACAGATTCATTTGTGAAGTATGCAACAAAGGGTTTCAAAGAGACCAAAACTTACAACTACACAGAAGAGGACACAATTTGCCATGGAAGCTCAGACAAAGAAGCAGCAAAGAAGCAGTAGTAGTGAAGAAGAAAGTATATATTTGTCCTGAAAAGGGTTGTGTTCATCATGATCCAAGTAGAGCACTTGGGGACCTAACTGGAATTAAAAAACACTATAGTAGAAAACATGGGGAGAAGAAGTGGAAGTGTGAGAAATGTTGCAAGAAATATGCCGTTCAATCTGATTGGAAAGCTCACTCTAAGACTTGTGGTACGAGAGACTACAAATGTGACTGTGGAACACTCTTTTCAAGGAAGGACAGCTTCATAACTCACAGGGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAAGCTAATATCATCAGTTACCTCACCAAATTCAAGACTTCATTTCATTGCCAATAATAATAATAATTCAATAATCAAGTCCCAATTTCTAGACCATAATTTCGAATCATCACCTTTATTCCCACAAATTCTTTCACCCACTGACAATCTCTTCCAGAACTCAAACCAAATCTTGAGTTTGAACAACAAAAACAATAATCACAATCCTTCAAAAACCGCCATTATGAACCTCACTCTGTCCTCCTTTACCCACAAACAACAACAACAACAACAAAACGTAGCAGCTTATGATAACTCGCCATCGTTTCGCTCGGTCACGGGTGGTGGTGGAGGGATGTCGGCGACGGCGCTGCTGTTGAAAGCGGCGCAATTGGGGTCGACGAAGAGCGATGATAACTCATTTTGTTCAGGGAGTAATAGTGTGGGAGTAGTTATGAGTTCGTCATCATCTTCAAAAAATATTTCAATTGAGACGAATGGTAATTATTTTGGGGGAAAGGGAAATGGGTTGAGGGATTTTTTTGGGAGGAAGGAATTAGGAGAAGGGAATAATGATGAGTTGATTATTCCATCAATGGAGATGACTAAATTTGCTAATTCTATGAGCTCTGAGATGGGGTTTAGCCAATTCATTGGGAATAATAGTGTTGGATAA 1341 39.0 MSGIDFSVSSNCIGEFGDHHRHQQQTSQLYHNHHHLLLPLNPNPIPNPIIQNVDSSSSLPPSLPKKKRNLPGKPDPDAEVIALSPNTLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEAVVVKKKVYICPEKGCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCCKKYAVQSDWKAHSKTCGTRDYKCDCGTLFSRKDSFITHRAFCDALAEESAKLISSVTSPNSRLHFIANNNNNSIIKSQFLDHNFESSPLFPQILSPTDNLFQNSNQILSLNNKNNNHNPSKTAIMNLTLSSFTHKQQQQQQNVAAYDNSPSFRSVTGGGGGMSATALLLKAAQLGSTKSDDNSFCSGSNSVGVVMSSSSSSKNISIETNGNYFGGKGNGLRDFFGRKELGEGNNDELIIPSMEMTKFANSMSSEMGFSQFIGNNSVG 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30142078 30145490 - MELO3C014250.2.1 Cme08g02321 336584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02321 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 57 380 - -
Cme08g02321 446 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Cme08g02321 446 Gene3D Classic Zinc Finger 74 145 - -
Cme08g02321 446 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 57 380 - -
Cme08g02321 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Cme08g02321 446 MobiDBLite consensus disorder prediction 47 77 - -
Cme08g02321 446 Gene3D Classic Zinc Finger 151 230 - -
Cme08g02321 446 MobiDBLite consensus disorder prediction 47 63 - -
Cme08g02321 446 Pfam Zinc-finger double-stranded RNA-binding 94 116 IPR022755 -
Cme08g02321 446 SUPERFAMILY beta-beta-alpha zinc fingers 93 193 IPR036236 -
Cme08g02321 446 SMART c2h2final6 94 116 IPR013087 -
Cme08g02321 446 SMART c2h2final6 138 168 IPR013087 -
Cme08g02321 446 SMART c2h2final6 173 193 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02321 Cme-Chr8:30142078 Cme11g00875 Cme-Chr11:11738322 1.20E-115 dispersed
Cme04g02537 Cme-Chr4:31606721 Cme08g02321 Cme-Chr8:30142078 7.72E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41883 PF12171 zf-C2H2_jaz 7.40E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02321 K25870 - csv:101221389 692.96