Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02346 ATGAGTGCTCATGCCGGCAGGCTGAGAGAGTTAAGAGAAACAAATCATCACGCCCATGATGGTAATGGAAGCGTGAATAATGGTGTATCTGGCAGGGAACAGAGCCCGGTTGAGGAAAATGAGTTGAAAATCAATGGATTAGCTAGAAATACAGAGGATGGTCGAAAATCCACTGTCCATGCGCAGGACATTCTGCAAATACAACAACAACAGCAGCCTCAAGGATCTATGGTCTGCTGGGAGAGATTTCTACATCTTAGGTCTCTGAAGGTTCTGCTTGTTGAAAATGACGACTCCACTCGCCATTTAGTCACTGCACTGCTTCGTAATTGCAGTTATGAAGTAATTGCGGCTGCAAATGGACTACACGCATGGAAGATGCTAGAAGATCTGACAAATCACATAGATCTCGTCCTAACAGAGGTGGTCATGCCTTGCTTATCTGGCATTGGTCTTTTATGCAAGATTATGAACCATAAAACGAGAAAGAATATACCTGTAATCATGATGTCATCTCATGATTCAATGGGTTTAGTCTTTAAATGTTTGTCAAAGGGTGCTGTTGATTTTTTAGTGAAGCCCATTCGGAAGAATGAGCTTAAAAATCTTTGGCAACATGTTTGGAGAAGATGCCATAGCTCTAGCGGCAGTGGAAGTGAGAGTGGCACACAGACCCAAAAATCTGTGAAGTCAAAAAGTGTTGAAAAATCAGATAACAACACTGGGAGTAATGATGAAGAAGAAGACAACGAGAGCATTGGTTTCAATATTGCTGATGGGAGCGATGATGGTAGTGGCACACAGAGTTCTTGGACTAAGCAAGCTATAGAAGTTGAAAGCCCTCGACCAGTATCTGCATCAGCATGGGATCATAAACGTGAACGTCCTGATAGTACTTGTGCTCAAGTTGTTCACTCAAATGCTGATGCATTTGCCAATAATGCGGCAATTATTTTGACAGCAGGGTGCCAGGTGCAGAAAAAGCAACTTGAAACTGCTACCTTGGCTAAAGTTGAACTAGGCATGCACAGAAATCTAGATTTACAACTTGAACTCTCTACGGAGCATCCAACCAAGCTAGTTAATAGAAAACAGAACATCAGGCTTGAGATTGGGTCTAGTGGATTCAATGAGCAGTTCAACAAAGGACATCTCGACCTCAACTCTGAGAGCCCATCGAGCAAACTTAAGTATGAGGAAACAACTGTTACTGGTCTTGGTACCAATCTTACTGATTCCAAGATGGATGTCACTGTGTTTGAGGCACCGAGCTGCCATCCCAAGACCACGGACATTAAGAATAAAGATGTTACAGATTCAGAAGATTTTCCATCTCTTGAGCTTGGGTTAAAAAGGCTTAGAGGAGTTCAAAAGACAGGGAAAGCAGTCCAAGATGAGCGGAATGTTTTGAGACGCTCAGATTCTTCAGCTTTTTCTAGGTACAATGCTGGCTCAAATTCTAACAAGACTCCAACTGGAAATGCTGGAAGTAACTCTCCACCTAGCAACTCTCCACCTGTTAATGGCTTAGAAGCTACAAATCAAGAGAACATGCAAGATATTCGATCTCGTTCCAGTGGTAACCCTCCCAATCAATGCTCAAATGGAGACAGCAATAATATCGACATGGGGTCCACTACCAATAATGCATTTTCCAAGTCTGTAGTTACTAATAACAAGTCAGCAATGGGATCAACAGTAAACTGCTTGTACCCATCGGCAGCTTTCCACCCTGTTAAGAATGACAGTCTATCTGTTCCACAGCTAGCTGATAATGTTAATAATGTCACAACTGCAACAATGCAAGCTCAGTCTAATTTTGTGCACAGGGAATCTCAAATGCAGCAACTTTGTCACACGTATGATCCTACTCATCAGCTTGTCCACAATATGCAACGATTATCGTCTGAGCATAATAATTTTTCATTAAAGAAAATATCTGCAGCTGCCACACATTGTGGGTCAAACAATGTTTTAAATGGTACTGTAGAGGGTAATGCAGCAAATTATAGTGTGAATGGTAGTGCCTCGGGCAGTAACCATGGAAGCAATGGCCAAAATGGGAGTAGCACTGCAGTAAATGCCGGAGGGCTGAATATGGAAAGTGATAATGGAGTAGGTCGAAGTGGGGATGCAAGTGGAAGTGGGAGCGGGAGTGGAAGTGGAAGTGGAAGTGGAAACAAAATGGACCAAAACAAAGTTTCACAAAGGGAAGCTGCCTTGACAAAGTTTCGCCAGAAAAGAAAGGAAAGATGCTTCCGTAAAAAGGTCCGATACCAAAGCAGAAAGAGATTAGCCGAACAGAGACCCCGAGTCAGGGGACAGTTTGTGAGGCAAAACACGAGTGAAAACACAAGCAATGCAGGAGATGGCTAA 2376 42.89 MSAHAGRLRELRETNHHAHDGNGSVNNGVSGREQSPVEENELKINGLARNTEDGRKSTVHAQDILQIQQQQQPQGSMVCWERFLHLRSLKVLLVENDDSTRHLVTALLRNCSYEVIAAANGLHAWKMLEDLTNHIDLVLTEVVMPCLSGIGLLCKIMNHKTRKNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSVEKSDNNTGSNDEEEDNESIGFNIADGSDDGSGTQSSWTKQAIEVESPRPVSASAWDHKRERPDSTCAQVVHSNADAFANNAAIILTAGCQVQKKQLETATLAKVELGMHRNLDLQLELSTEHPTKLVNRKQNIRLEIGSSGFNEQFNKGHLDLNSESPSSKLKYEETTVTGLGTNLTDSKMDVTVFEAPSCHPKTTDIKNKDVTDSEDFPSLELGLKRLRGVQKTGKAVQDERNVLRRSDSSAFSRYNAGSNSNKTPTGNAGSNSPPSNSPPVNGLEATNQENMQDIRSRSSGNPPNQCSNGDSNNIDMGSTTNNAFSKSVVTNNKSAMGSTVNCLYPSAAFHPVKNDSLSVPQLADNVNNVTTATMQAQSNFVHRESQMQQLCHTYDPTHQLVHNMQRLSSEHNNFSLKKISAAATHCGSNNVLNGTVEGNAANYSVNGSASGSNHGSNGQNGSSTAVNAGGLNMESDNGVGRSGDASGSGSGSGSGSGSGNKMDQNKVSQREAALTKFRQKRKERCFRKKVRYQSRKRLAEQRPRVRGQFVRQNTSENTSNAGDG 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30431867 30440739 + MELO3C003075.2.1 Cme08g02346 336609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02346 791 MobiDBLite consensus disorder prediction 457 546 - -
Cme08g02346 791 Pfam Response regulator receiver domain 91 202 IPR001789 GO:0000160
Cme08g02346 791 ProSiteProfiles Response regulatory domain profile. 90 208 IPR001789 GO:0000160
Cme08g02346 791 MobiDBLite consensus disorder prediction 12 55 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 774 791 - -
Cme08g02346 791 Pfam CCT motif 737 779 IPR010402 GO:0005515
Cme08g02346 791 MobiDBLite consensus disorder prediction 213 295 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 20 34 - -
Cme08g02346 791 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 26 767 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 261 276 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 458 473 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 674 698 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 213 230 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 706 739 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 747 762 - -
Cme08g02346 791 SUPERFAMILY CheY-like 87 213 IPR011006 -
Cme08g02346 791 Gene3D - 88 367 - -
Cme08g02346 791 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 767 IPR045279 GO:0009736
Cme08g02346 791 SMART REC_2 89 204 IPR001789 GO:0000160
Cme08g02346 791 ProSiteProfiles CCT domain profile. 737 779 IPR010402 GO:0005515
Cme08g02346 791 CDD psREC_PRR 91 194 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 474 546 - -
Cme08g02346 791 MobiDBLite consensus disorder prediction 674 791 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01814 Cme-Chr3:26511985 Cme08g02346 Cme-Chr8:30431867 2.63E-09 dispersed
Cme08g02346 Cme-Chr8:30431867 Cme09g02021 Cme-Chr9:23891816 4.99E-15 dispersed
Cme08g02346 Cme-Chr8:30431867 Cme02g01081 Cme-Chr2:15840669 6.62E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41885 PF00072 Response_reg 1.60E-20 CL0304 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02346 K12129 - csv:101210765 1417.14