Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02365 CTGATTCTTACAGGAAAACCTTCGAATAGCTGTCAATTCCTTGTTTCGCTTTCTCCAAACCAATCCAATCCAATCCAATCCAATCCAGTCCAAACGCCTTCTGTTATAATGGGTAACGCCCATGGCCACCGCAAGCATTTCAACCATGGCGTAAATATCTCTCCAACCACTAACGCTCCTTTTCCCTCCAATAAATACTCTTCATCTGAACCCACTTCTCGAAATTCCTCCTCCTCCACGAATATGGAGTCCTTGCCCTACCCCCATGTTGATTCCAGCCTTCGAGCCCTTGCCGCTCAGGCTGAGGGCTTTGGTCGCTCTGCCATTGGTGGTCTCCATGGTTCTGTTTATTGTGTTACTAATTTATCAGATGATGGTCCAGGATCACTTAGGTTCGGATGTCGTATGAAAGAGCCTCTTTGGATTATCTTTGAAGTTTCGGGGACAATTGACCTGTCTTCGTATGTGAGTGTGTCATCATACAAGACTGTAGATGGTCGTGGTCAAAGGATAAAACTTACAGGAAAGGGATTGAGGCTGAAGGAATGTGAGCATGTGATTATTTGTAATTTGGAGTTTGAAGGTGGTAGAGGTCATGATGTTGATGGAATTCAAATTAAGCCGAACTCAAAGCACATTTGGATAGACCGTTGCAGCCTCCGAGACTATGATGATGGGTTGATTGATATCACTCGAGGAAGCACAGATATCACTATTTCTAGGTGTTACTTCTCACATCATGACAAGACAATGCTCATTGGAGCAGATCCTTCTCACATTGGCGACCGATGTATCCGTGTCACTATCCACCATTGTTTTTTCGATGGTACACGTCAACGGCATCCACGTGTTAGATATGCTCAAGTGCATTTATACAATAATTACACCAGAAACTGGGGTATCTATGCTGTCTGTGCTAGTGTAGAATCAAAGATATACTCTCAGTGCAACATATACGAAGCAGGAGAGAAAAAGGTGGCATTTAAATATCTAACTGAAAAGGCAACGGACAAGGAAGAGCCCTCAAGTGGTACCATATGGTCTGATGGAGACTTATTTGTAAAGGGCACTCAAAGTGGGCTATTGGCTCCAACTGCTGAACACAACATGTTTCATCCTTCAGAACATTACACTAATTGGACAGTGGAACCTGCAACAGATGCTCTTAAACATATTCTCCAACATTGTACTGGATGTCAAAACATCCCAAGACCCACTGATCAGCCTCTGGTACCTTAA 1239 43.58 LILTGKPSNSCQFLVSLSPNQSNPIQSNPVQTPSVIMGNAHGHRKHFNHGVNISPTTNAPFPSNKYSSSEPTSRNSSSSTNMESLPYPHVDSSLRALAAQAEGFGRSAIGGLHGSVYCVTNLSDDGPGSLRFGCRMKEPLWIIFEVSGTIDLSSYVSVSSYKTVDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDYDDGLIDITRGSTDITISRCYFSHHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRHPRVRYAQVHLYNNYTRNWGIYAVCASVESKIYSQCNIYEAGEKKVAFKYLTEKATDKEEPSSGTIWSDGDLFVKGTQSGLLAPTAEHNMFHPSEHYTNWTVEPATDALKHILQHCTGCQNIPRPTDQPLVP 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30568265 30571576 + MELO3C003093.2.1 Cme08g02365 336628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02365 412 Pfam Pectate lyase 155 317 IPR002022 -
Cme08g02365 412 SMART amb_all 112 325 IPR002022 -
Cme08g02365 412 PANTHER PECTATE LYASE 18-RELATED 79 405 IPR045032 GO:0030570
Cme08g02365 412 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Cme08g02365 412 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Cme08g02365 412 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Cme08g02365 412 PANTHER PECTATE LYASE 79 405 - -
Cme08g02365 412 Gene3D - 86 395 IPR012334 -
Cme08g02365 412 MobiDBLite consensus disorder prediction 40 85 - -
Cme08g02365 412 SUPERFAMILY Pectin lyase-like 100 403 IPR011050 -
Cme08g02365 412 MobiDBLite consensus disorder prediction 50 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02365 Cme-Chr8:30568265 Cme08g00423 Cme-Chr8:2582156 2.20E-50 dispersed
Cme08g02365 Cme-Chr8:30568265 Cme10g00106 Cme-Chr10:731398 1.08E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02365 K01728 - csv:101219724 741.88