Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02387 ATGAACATAAGCTCCATCAAAACTGCCTCCAATGGCATATGGCAAGGTGACAATCCTCTCCATTTCGCCTTCCCTCTCTTAATCCTTCAATCCGTTCTCATCCTCGTTCTCACTCGCTTCCTCGCCCTCCTCCTCAAACCCCTCCGTCAACCCAAAGTCATCGCCGAGATCGTCGGTGGGATTCTACTGGGTCCATCCGCTTTCGGACGTAACAAAACTTATTTAAACCACATTTTCCCCTCATGGAGTACTCCCATTCTCGAATCAGTCGCCAGTATTGGTCTGTTGTTCTTCCTCTTCCTCGTTGGACTCGAACTCGATTTGTCCTCCATTCGTCGTAGCGGTAAACGAGCATTTGGAATTGCTCTAGCGGGAATCTCCGTCCCATTCTTTTCTGGCATAGGTGTCGCCTTCGTCCTGCGTAAAACCGTCGATGGCGCTGACAAAGTTGGTTACGGTCAGTTCATTGTATTCATGGGTGTCGCTCTATCCATCACTGCTTTTCCTGTTTTAGCTCGCATTTTAGCAGAGCTAAAGCTCCTCACAACCCAAGTTGGGGAAACAGCTATGGCCGCCGCCGCATTCAACGACGTAGCCGCTTGGATCCTCCTGGCACTCGCCGTTGCCTTAGCCGGCAACGGCGGCGAAGGCGGATCCGAGAAGAGTCCATTGGTTTCTGTGTGGGTGTTACTTTCAGGAGCCGGGTTTGTGGTTTTCATGATGGTGGTCACTCGTCCCGGAATGAAATGGGTGGCGCGTCGATGCACGTACGAGCACGACGCCGTAGACGAGGCGTATATCTGTTTGACATTGGTGGGGGTTTTGGTTTCGGGGTTTGTGACGGATTTGATCGGAATTCATTCCATTTTTGGGGGATTTATATTTGGATTGACGATTCCAAAAGGGGGAAGATTTGCAGAGAGATTGATTGAGAGAATTGAAGATTTCGTTTCGGGTCTTCTTCTTCCTCTGTATTTTGCTTCAAGTGGATTAAAGACGGATGTGGCCAAAATTAAAGGGGGGAAAGCTTGGGGGTTGTTGGCGCTGGTTATATCGACGGCGTGCGCCGGTAAGATTCTGGCGACGTTTGTGGCGGCGATGGTGTTTTTGATTCCGACGAGGGAGGCGCTGGCGTTGGGTGTGCTTATGAATACCAAGGGCTTGGTTGAACTCATTGTCCTCAATATTGGGAAGGAGAAAAAGGTTTTAAACGACGAAGTGTTCGCCATATTAGTGTTAATGGCACTATTCACAACATTCATCACCACCCCCACCGTGATGGCAGTTTACAAGCCAGCCCGAGGTGGCTCCACCCCACCTACCCACCGTAAACTTCGAGACCTCTCCGCCAATGACTCCCCCGTCGAGGACGAGCTCCGGATCCTCGCTTGTGTCCACAGCTCCGGCAACGTGCCGTCCCTCATCACACTGACCGAGTCAACTCGCAGCACCAAAAATTCCTCCCTCAAACTCTTCGTAATGCACTTGGTCGAACTCACCGAGCGATCCTCTTCCATCATGATGGTCCAACGCGCCCGCAAAAACGGCTTCCCTTTCTTCGCCCGGTTCCGCAAGGCCAGCGAGTGGCGAGACCAAATGGCTGCGGCCTTTCAGGCCTATAGCCAATTGGGCCGAGTCAAGGTTCGGCCCACTACGGCCGTCTCTTCCTTAGCTACCATGCATGAGGATATCTGCCACGTCGCGGATGACAAGAGGGTTACGATGATTATCTTGCCGTTTCATCGGAATTGGAGGGCATTTGGCGGCGGCGATGGGGCGGAGGAGGAGGTGGAGGAGAATGTGGGCCATGGTTGGAGAGTTGTGAACCAACGGGTTTTGAAGAATGCGCCTTGCTCTGTGGCGGTTCTTGTGGACCGGGGATTTGGGGCCGGTGTGGCCCAGACGCCTGGGCCTGGGCCTATGATTTGTGTGGGTCAAAGGATTTGTGTTTTGTTTTTTGGTGGGCCAGATGATCGGGAGGCGCTGGAGTTGGGTGGCCGGATGGCGGAGCATCCGGCGGTGAAGGTGACGGTGGTTAGGTTTCGGCCGTCGTCGGCGGATGGTATGGAGGGTAGTAATGTCATTTTGCGTCCGACGCACTCGAAATCAAGCGATAACCATTATAGCTTCATCACCACTCCGATCAACCGGGAAAAAGAAAAGGAACAAGATGAAACAGCATTGGCAGAATTCAAAAGCAAATGGGAAGCAACAGTTGAGTACAAAGAGAAGGAGGTCAGCAGCACAAACATGATAGTTGAAGGGGTGGTAGCCCTTGGGAAGGAAATGAGTTACGACCTAATAGTGGTCGGGAAAGGTCGGGTTCCCTCGAGCTTGGTGATGAAACTAGCGGACCGACCAGCGGAGCACGCAGAGTTGGGGCCAGTGGGAGACATATTGGCCAGCTCTGGCAAGGGAATAGTATCTTCAATATTAATAATTCAACAACATGGAGGAGGTGGCCACGTAGAAGAAACTCCAGTTTTGAAGATAGCACAATCCAATAAGAATGAGAATGAGTTGCCTATGTCAAATGATGGAACCTCAATTGATCATGTATAA 2562 51.64 MNISSIKTASNGIWQGDNPLHFAFPLLILQSVLILVLTRFLALLLKPLRQPKVIAEIVGGILLGPSAFGRNKTYLNHIFPSWSTPILESVASIGLLFFLFLVGLELDLSSIRRSGKRAFGIALAGISVPFFSGIGVAFVLRKTVDGADKVGYGQFIVFMGVALSITAFPVLARILAELKLLTTQVGETAMAAAAFNDVAAWILLALAVALAGNGGEGGSEKSPLVSVWVLLSGAGFVVFMMVVTRPGMKWVARRCTYEHDAVDEAYICLTLVGVLVSGFVTDLIGIHSIFGGFIFGLTIPKGGRFAERLIERIEDFVSGLLLPLYFASSGLKTDVAKIKGGKAWGLLALVISTACAGKILATFVAAMVFLIPTREALALGVLMNTKGLVELIVLNIGKEKKVLNDEVFAILVLMALFTTFITTPTVMAVYKPARGGSTPPTHRKLRDLSANDSPVEDELRILACVHSSGNVPSLITLTESTRSTKNSSLKLFVMHLVELTERSSSIMMVQRARKNGFPFFARFRKASEWRDQMAAAFQAYSQLGRVKVRPTTAVSSLATMHEDICHVADDKRVTMIILPFHRNWRAFGGGDGAEEEVEENVGHGWRVVNQRVLKNAPCSVAVLVDRGFGAGVAQTPGPGPMICVGQRICVLFFGGPDDREALELGGRMAEHPAVKVTVVRFRPSSADGMEGSNVILRPTHSKSSDNHYSFITTPINREKEKEQDETALAEFKSKWEATVEYKEKEVSSTNMIVEGVVALGKEMSYDLIVVGKGRVPSSLVMKLADRPAEHAELGPVGDILASSGKGIVSSILIIQQHGGGGHVEETPVLKIAQSNKNENELPMSNDGTSIDHV 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30749067 30754533 - MELO3C003113.2.1 Cme08g02387 336650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02387 853 MobiDBLite consensus disorder prediction 834 853 - -
Cme08g02387 853 Gene3D - 26 434 IPR038770 -
Cme08g02387 853 PANTHER CATION/H + ANTIPORTER 2 832 - -
Cme08g02387 853 PANTHER BNAC06G14930D PROTEIN 2 832 - -
Cme08g02387 853 Gene3D - 460 795 - -
Cme08g02387 853 Pfam Sodium/hydrogen exchanger family 33 426 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02387 - - - cmo:103490056 1588.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02387 Cme-Chr8:30749067 Cme11g00056 Cme-Chr11:476797 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g701 . . . . . . . . . . . Cma07g00971 . Car07g00960 . Cpe10g00875 . Bhi03g01987 . . . Hepe04g0870 . . . . . . . . . . Cone10ag0300 . . Lsi01g01409 . . . . . . . . Bpe02g00838 . . . . Cmo07g01023 . . . . . . . . . . . . . . . . . . . . . . . Cme08g02387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme11g00056 . 11 815 Antiporter Super Family AT2G13620 72.2 0.0e+00 1158.3
Cme07g01598 . 11 785 Antiporter Super Family AT2G13620 50.8 2.7e-209 725.7
Cme07g01598 . 4 785 Antiporter Super Family AT1G64170 57.8 8.1e-243 837.0
Cme07g01599 . 1 784 Antiporter Super Family AT1G64170 55.8 1.3e-232 803.1
Cme07g01597 . 3 794 Antiporter Super Family AT1G64170 54.2 9.9e-225 776.9
Cme07g01598 . 11 783 Antiporter Super Family AT4G23700 66.3 3.7e-288 987.6
Cme07g01599 . 9 796 Antiporter Super Family AT4G23700 62.9 4.1e-279 957.6
Cme07g01597 . 8 791 Antiporter Super Family AT4G23700 62.0 2.6e-273 938.3
Cme07g01599 . 1 779 Antiporter Super Family AT5G41610 69.9 2.6e-310 1061.2
Cme07g01598 . 1 785 Antiporter Super Family AT5G41610 66.8 6.7e-298 1020.0
Cme07g01597 . 7 791 Antiporter Super Family AT5G41610 63.5 8.2e-280 959.9
Cme08g02387 . 6 821 Antiporter Super Family AT5G41610 50.8 2.4e-207 719.2
Cme07g01599 . 5 779 Antiporter Super Family AT3G17630 63.7 3.7e-272 934.5
Cme07g01598 . 4 783 Antiporter Super Family AT3G17630 62.7 6.2e-272 933.7
Cme07g01597 . 7 791 Antiporter Super Family AT3G17630 59.5 9.1e-255 876.7
Cme08g02387 . 6 815 Antiporter Super Family AT3G17630 52.6 5.4e-207 718.0
Cme08g02387 . 74 846 Antiporter Super Family AT3G53720 69.1 4.4e-291 997.3
Cme07g01599 . 83 779 Antiporter Super Family AT3G53720 50.7 1.4e-183 640.2
Cme01g02457 . 24 425 Antiporter Super Family AT3G52080 58.0 3.3e-132 469.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004121 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 3 1 2 1 2 2 43