Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g02396 | ATGGTATTTCCCTCCATCCCATCTAATTATCTTGATCCAACCACCCATCAATGGCAACAGCAAACAGCGACAAACCATCAATCTGGGAGTGGTACTATGATTGGAGGCAGCAGTTTTCAGCTGGCGCCATCACCACCACCGTCACAAGTTCGGCCTGGGTCGATGGCAGATCGGGCCCGGATGGCGAACCTGCCGGTGCCAGAGACAGCGTTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGTGCCCTTCGAAGCGTCCCGGTTGGTGGCGGCTACCGCCGGAATAATAAACGAACTAAAAGTTCGTCTAAATCTCCTGTTAACTCTCAATGCCAACCTACAACTACTGAGCCTTCAGCAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACCAAATGAAGGAGCTGTGGATTCAACTCATCATCATCATCATCATCATCATCCCATTGGGATATCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACAACACAGCCATCTTCGTTGGTCGCAAATTCAGCTCGGTTGCTAGGAAATGGTGGCATCAACTCATCCTTGAGTTATAGCATCGTTGGAGAGATTCAAAAGAAGATGGACGCGACAACGACGAAAATGGAGGAAGATGGGCAACAAGTAGCAGAGGTGAATAATGTGGGAAAGCCATTTTGGGGAGTTGTTGGAGGAAATGATAATCGCCATTATTGGAATGGTTTTAATCCTTCATCTTCTTCTTCCCATTCACAAGTATGA | 870 | 46.78 | MVFPSIPSNYLDPTTHQWQQQTATNHQSGSGTMIGGSSFQLAPSPPPSQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSSSKSPVNSQCQPTTTEPSAGEAMRLNYNNAISTPNEGAVDSTHHHHHHHHPIGISNFLGFDQIQWRPQLQLHQTTQPSSLVANSARLLGNGGINSSLSYSIVGEIQKKMDATTTKMEEDGQQVAEVNNVGKPFWGVVGGNDNRHYWNGFNPSSSSSHSQV | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30824290 | 30826314 | + | MELO3C003121.2.1 | Cme08g02396 | 336659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g02396 | 289 | MobiDBLite | consensus disorder prediction | 129 | 148 | - | - | |
Cme08g02396 | 289 | MobiDBLite | consensus disorder prediction | 24 | 55 | - | - | |
Cme08g02396 | 289 | ProSitePatterns | Zinc finger Dof-type signature. | 73 | 109 | IPR003851 | GO:0003677|GO:0006355 | |
Cme08g02396 | 289 | ProSiteProfiles | Zinc finger Dof-type profile. | 71 | 125 | IPR003851 | GO:0003677|GO:0006355 | |
Cme08g02396 | 289 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 15 | 286 | IPR045174 | GO:0003700|GO:0006355 | |
Cme08g02396 | 289 | MobiDBLite | consensus disorder prediction | 112 | 148 | - | - | |
Cme08g02396 | 289 | MobiDBLite | consensus disorder prediction | 24 | 44 | - | - | |
Cme08g02396 | 289 | Pfam | Dof domain, zinc finger | 70 | 125 | IPR003851 | GO:0003677|GO:0006355 | |
Cme08g02396 | 289 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 15 | 286 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme04g02612 | Cme08g02396 | CCT | |
Cme04g02612 | Cme08g02396 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g02396 | Cme-Chr8:30824290 | Cme09g00505 | Cme-Chr9:4859893 | 3.07E-40 | dispersed | |
Cme10g00889 | Cme-Chr10:6268570 | Cme08g02396 | Cme-Chr8:30824290 | 1.34E-50 | wgd | |
Cme11g01283 | Cme-Chr11:19582850 | Cme08g02396 | Cme-Chr8:30824290 | 1.13E-48 | wgd | |
Cme12g00200 | Cme-Chr12:2069742 | Cme08g02396 | Cme-Chr8:30824290 | 4.03E-48 | wgd | |
Cme04g02612 | Cme-Chr4:32047295 | Cme08g02396 | Cme-Chr8:30824290 | 9.12E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41888 | PF02701 | zf-Dof | 4.10E-31 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g02396 | - | - | csv:101207098 | 527.709 |