Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02396 ATGGTATTTCCCTCCATCCCATCTAATTATCTTGATCCAACCACCCATCAATGGCAACAGCAAACAGCGACAAACCATCAATCTGGGAGTGGTACTATGATTGGAGGCAGCAGTTTTCAGCTGGCGCCATCACCACCACCGTCACAAGTTCGGCCTGGGTCGATGGCAGATCGGGCCCGGATGGCGAACCTGCCGGTGCCAGAGACAGCGTTGAAGTGTCCAAGATGTGAATCAACAAACACAAAGTTTTGTTACTTCAACAACTATAGCCTCTCTCAGCCCCGCCATTTCTGCAAGACCTGCCGCCGCTACTGGACCAGAGGCGGTGCCCTTCGAAGCGTCCCGGTTGGTGGCGGCTACCGCCGGAATAATAAACGAACTAAAAGTTCGTCTAAATCTCCTGTTAACTCTCAATGCCAACCTACAACTACTGAGCCTTCAGCAGGAGAAGCAATGAGATTAAATTACAATAATGCCATTTCCACACCAAATGAAGGAGCTGTGGATTCAACTCATCATCATCATCATCATCATCATCCCATTGGGATATCCAACTTTTTAGGGTTTGATCAAATTCAATGGCGACCACAGCTTCAACTTCACCAAACAACACAGCCATCTTCGTTGGTCGCAAATTCAGCTCGGTTGCTAGGAAATGGTGGCATCAACTCATCCTTGAGTTATAGCATCGTTGGAGAGATTCAAAAGAAGATGGACGCGACAACGACGAAAATGGAGGAAGATGGGCAACAAGTAGCAGAGGTGAATAATGTGGGAAAGCCATTTTGGGGAGTTGTTGGAGGAAATGATAATCGCCATTATTGGAATGGTTTTAATCCTTCATCTTCTTCTTCCCATTCACAAGTATGA 870 46.78 MVFPSIPSNYLDPTTHQWQQQTATNHQSGSGTMIGGSSFQLAPSPPPSQVRPGSMADRARMANLPVPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGYRRNNKRTKSSSKSPVNSQCQPTTTEPSAGEAMRLNYNNAISTPNEGAVDSTHHHHHHHHPIGISNFLGFDQIQWRPQLQLHQTTQPSSLVANSARLLGNGGINSSLSYSIVGEIQKKMDATTTKMEEDGQQVAEVNNVGKPFWGVVGGNDNRHYWNGFNPSSSSSHSQV 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30824290 30826314 + MELO3C003121.2.1 Cme08g02396 336659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02396 289 MobiDBLite consensus disorder prediction 129 148 - -
Cme08g02396 289 MobiDBLite consensus disorder prediction 24 55 - -
Cme08g02396 289 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Cme08g02396 289 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Cme08g02396 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 286 IPR045174 GO:0003700|GO:0006355
Cme08g02396 289 MobiDBLite consensus disorder prediction 112 148 - -
Cme08g02396 289 MobiDBLite consensus disorder prediction 24 44 - -
Cme08g02396 289 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Cme08g02396 289 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 15 286 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02612 Cme08g02396 CCT
Cme04g02612 Cme08g02396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02396 Cme-Chr8:30824290 Cme09g00505 Cme-Chr9:4859893 3.07E-40 dispersed
Cme10g00889 Cme-Chr10:6268570 Cme08g02396 Cme-Chr8:30824290 1.34E-50 wgd
Cme11g01283 Cme-Chr11:19582850 Cme08g02396 Cme-Chr8:30824290 1.13E-48 wgd
Cme12g00200 Cme-Chr12:2069742 Cme08g02396 Cme-Chr8:30824290 4.03E-48 wgd
Cme04g02612 Cme-Chr4:32047295 Cme08g02396 Cme-Chr8:30824290 9.12E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41888 PF02701 zf-Dof 4.10E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02396 - - csv:101207098 527.709