Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02402 ATGGCTGATAACGAGGATATCCAGCCTCTCGTCTGTGATAATGGAACAGGGATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTCGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCCATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTTCTCACTGAAGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTTCCCATCTATGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGTCGTGACCTCACGGACGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAATTGGCCTACATTGCCCTCGACTATGAGCAAGAATTAGAAACCTCTAAGACTAGCTCTTCTGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATTACCATCGGCGCTGAGCGCTTTCGATGTCCAGAAGTCCTCTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCACGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCCGATAGAATGAGCAAGGAGATCACGGCGTTGGCGCCGAGCAGCATGAAGATTAAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGTCCTTCAATTGTTCACAGGAAATGCTTCTAA 1056 46.97 MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKMWIAKAEYDESGPSIVHRKCF 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30915731 30918679 + MELO3C003128.2.1 Cme08g02402 336665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02402 351 Gene3D - 3 351 - -
Cme08g02402 351 SMART actin_3 7 351 IPR004000 -
Cme08g02402 351 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cme08g02402 351 Pfam Actin 5 331 IPR004000 -
Cme08g02402 351 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cme08g02402 351 PANTHER ACTIN 1 332 IPR004000 -
Cme08g02402 351 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cme08g02402 351 PRINTS Actin signature 117 130 IPR004000 -
Cme08g02402 351 PRINTS Actin signature 142 161 IPR004000 -
Cme08g02402 351 PRINTS Actin signature 63 85 IPR004000 -
Cme08g02402 351 PRINTS Actin signature 28 37 IPR004000 -
Cme08g02402 351 PRINTS Actin signature 51 62 IPR004000 -
Cme08g02402 351 PRINTS Actin signature 238 254 IPR004000 -
Cme08g02402 351 PANTHER ACTIN 3 1 332 - -
Cme08g02402 351 SUPERFAMILY Actin-like ATPase domain 149 351 IPR043129 -
Cme08g02402 351 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cme08g02402 351 ProSitePatterns Actins signature 2. 332 340 IPR004001 -
Cme08g02402 351 Gene3D - 154 320 - -
Cme08g02402 351 Gene3D Actin; Chain A, domain 4 184 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02402 Cme-Chr8:30915731 Cme10g00888 Cme-Chr10:6260020 0 dispersed
Cme10g00903 Cme-Chr10:6441587 Cme08g02402 Cme-Chr8:30915731 9.54E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02402 K10355 - csv:101214246 686.026