Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme08g02402 | ATGGCTGATAACGAGGATATCCAGCCTCTCGTCTGTGATAATGGAACAGGGATGGTTAAGGCTGGGTTTGCTGGGGATGATGCTCCAAGGGCCGTCTTCCCTAGCATTGTTGGTCGCCCCCGTCATACAGGTGTTATGGTCGGAATGGGACAGAAAGATGCTTATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATTTTGACTCTCAAATACCCCATTGAGCATGGAATTGTCAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAATGAACTTCGTGTCGCTCCAGAAGAACATCCAGTTCTTCTCACTGAAGCACCACTCAATCCCAAAGCTAACCGTGAGAAAATGACCCAGATTATGTTTGAGACCTTCAATGCACCAGCTATGTATGTAGCCATTCAAGCCGTCCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTTGATTCTGGAGATGGTGTCAGTCACACAGTTCCCATCTATGAGGGATATGCACTTCCACATGCTATCCTACGTCTTGATCTTGCTGGTCGTGACCTCACGGACGCCCTCATGAAAATTTTGACTGAGCGTGGTTATTCCTTCACCACCACAGCCGAGCGTGAAATTGTGAGAGATATGAAGGAAAAATTGGCCTACATTGCCCTCGACTATGAGCAAGAATTAGAAACCTCTAAGACTAGCTCTTCTGTTGAGAAGAGTTATGAGTTGCCTGATGGTCAGGTGATTACCATCGGCGCTGAGCGCTTTCGATGTCCAGAAGTCCTCTTCCAGCCATCCATGATCGGTATGGAAGCTGCTGGTATTCACGAAACCACATACAATTCCATCATGAAATGTGATGTTGACATCAGGAAAGATTTGTATGGAAACATTGTGCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCCGATAGAATGAGCAAGGAGATCACGGCGTTGGCGCCGAGCAGCATGAAGATTAAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGTCCTTCAATTGTTCACAGGAAATGCTTCTAA | 1056 | 46.97 | MADNEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKMWIAKAEYDESGPSIVHRKCF | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30915731 | 30918679 | + | MELO3C003128.2.1 | Cme08g02402 | 336665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme08g02402 | 351 | Gene3D | - | 3 | 351 | - | - | |
Cme08g02402 | 351 | SMART | actin_3 | 7 | 351 | IPR004000 | - | |
Cme08g02402 | 351 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
Cme08g02402 | 351 | Pfam | Actin | 5 | 331 | IPR004000 | - | |
Cme08g02402 | 351 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
Cme08g02402 | 351 | PANTHER | ACTIN | 1 | 332 | IPR004000 | - | |
Cme08g02402 | 351 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
Cme08g02402 | 351 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
Cme08g02402 | 351 | PANTHER | ACTIN 3 | 1 | 332 | - | - | |
Cme08g02402 | 351 | SUPERFAMILY | Actin-like ATPase domain | 149 | 351 | IPR043129 | - | |
Cme08g02402 | 351 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
Cme08g02402 | 351 | ProSitePatterns | Actins signature 2. | 332 | 340 | IPR004001 | - | |
Cme08g02402 | 351 | Gene3D | - | 154 | 320 | - | - | |
Cme08g02402 | 351 | Gene3D | Actin; Chain A, domain 4 | 184 | 270 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g02402 | Cme-Chr8:30915731 | Cme10g00888 | Cme-Chr10:6260020 | 0 | dispersed | |
Cme10g00903 | Cme-Chr10:6441587 | Cme08g02402 | Cme-Chr8:30915731 | 9.54E-13 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme08g02402 | K10355 | - | csv:101214246 | 686.026 |