Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02404 ATGCCGATCGCTGGGTTTCGATCTCTTCTATGGTGGAGTAAATGGTCCAAGAAAGACTGGGCCATTGCAGTAATCTGTTTCGCTTTCATTTTTTTCGTGTTCTCCTTCTTCTCCGATTCTTGGTATGCTGAACACAGTGGCATCAACCACACTTTCGATCTCAATCCCGCCAACGACCCCGATATGGTTGACCTCACTTTGCTGCAAAATGCCAAAGCAAAAGGCGCTCTATGTCTTGATGGGAGTTTGCCCGGTTACCATTTTCAGAAAGGCTTCGGGTCTGGTTCTGGCAACTGGGTTCTTCACATTGAGGGTGGAGGGTGGTGTGATACAATCTCGTCCTGTTCTTGGCGTAAAATGACCCCGTTAGGTTCATCAGATTACATGGAGCGTCGTGTTCATTTCTCTGGAATTTTAAGTAGTGATGCATCACAAAATCCCGATTTCTATAATTGGAACAAAATCAAGATACGTTACTGTGATGGAGCATCGTTTGCAGGCCATCCTGTGGGTGAAACAAAGAATGGAAGTATACTTCATTTCAGAGGCCAGCTCATCTGGGAAGCTCTTATGGATGAACTCTTATCTGTTGGCTTGTCCAAGGCAAGACAGGCTCTTCTTTCAGGGTGCTCTGCTGGGGGCTTGGCTACCCTTATTCATTGTGATGACTTCAGAGAGCTTTTACCGAAGGATGCAACTGTCAAGTGTCTAGCCGATGCTGGATTTTTCCTTGATGAGAAAGATGTTTCGGGAAATCATACAATGAGATCTTTCTATCACCATGTTTTCAACCTTCAGAGGACTGGTAAAAGTTTACCCAAGGATTGTACAGCTACAGACGAGCCATCTAAGTGTCTCTTTCCTCAAGAAATTATCAAACATATAAGCACCCCGTTGTTTATTGTCAACCCAGCTTATGATTTTTGGCAGATACAAAATGTCTTGGTGCCAAACACATTAGCTCGTACTGGCTCTTGGCAGAAATGTAGGCTTAATATTCATAAATGTGATCATGCTGAGCTTGGAATTCTTCAAGGGTTCCGGAACTCTTTGCTGAAGGCACTGGATGACTTCAAGCACAACAAGGAAGGAGGACTTTTTGTAAATTCTTGCTTCGTCCATTGCCAAACATGGATGTCTGAGACATGGCACTCCCCCAATTCTCCAAGGATAAATAAGAGGACTATAGCAGAGGCCGTGGGTGATTGGTACTTCAAACGGAATTCAGTGAAGCTAATTGACTGCCCTTTTCCATGCAATCCTACCTGCATTCATATGGATTTTAGCCGAGGTTAG 1296 44.21 MPIAGFRSLLWWSKWSKKDWAIAVICFAFIFFVFSFFSDSWYAEHSGINHTFDLNPANDPDMVDLTLLQNAKAKGALCLDGSLPGYHFQKGFGSGSGNWVLHIEGGGWCDTISSCSWRKMTPLGSSDYMERRVHFSGILSSDASQNPDFYNWNKIKIRYCDGASFAGHPVGETKNGSILHFRGQLIWEALMDELLSVGLSKARQALLSGCSAGGLATLIHCDDFRELLPKDATVKCLADAGFFLDEKDVSGNHTMRSFYHHVFNLQRTGKSLPKDCTATDEPSKCLFPQEIIKHISTPLFIVNPAYDFWQIQNVLVPNTLARTGSWQKCRLNIHKCDHAELGILQGFRNSLLKALDDFKHNKEGGLFVNSCFVHCQTWMSETWHSPNSPRINKRTIAEAVGDWYFKRNSVKLIDCPFPCNPTCIHMDFSRG 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30938790 30950613 + MELO3C003130.2.1 Cme08g02404 336667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02404 431 PANTHER PECTIN ACETYLESTERASE 4 13 424 - -
Cme08g02404 431 Pfam Pectinacetylesterase 59 409 IPR004963 GO:0016787
Cme08g02404 431 PANTHER NOTUM-RELATED 13 424 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00004 Cme-Chr2:57982 Cme08g02404 Cme-Chr8:30938790 1.56E-150 dispersed
Cme06g01008 Cme-Chr6:7237982 Cme08g02404 Cme-Chr8:30938790 1.61E-142 dispersed
Cme07g01469 Cme-Chr7:20477349 Cme08g02404 Cme-Chr8:30938790 4.63E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02404 K19882 - csv:101206380 845.499