Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02405 ATGGGTAATCGTATTGGGAAGATTGGCCACTGTTTCGCCGGCGCCGGCGATATCTCCCGGCGTTATGATCCCGCCGACATTATCTCCGACCCCCAGGATGGGGGTTTCGGTCATTCCTTCTACTACTTACCACCCGACCCTCATACTCTCTCGTCATCCAAAGATTTCTCCGACGACTACATCTCTCCGGTGACCTTTTTCCGGTCGATATCCGGCGCTTCCGTCAGTGCCAACGTCTCAACGCCACTCTCCACTTCTCTTGTCGATCTCTATCCTTACAGCACCACGTTTGATCGTGCTGCAGCTTTTGATTGCACGAATTCCTTCGCCTCTGTGCCGTTGCAGCCGGTGCCTCGCCACTCGGTGTCGGGAAATTCCGGTGGATTTCCGTCTTCGGGTCCGCTGGAGAGAGGGTTTTTATCTGGACCTTTGGCTGCCAGGAGTTTTGAGTCGGGTCCGATTGATCGAGTGGTTCATTCCGGTCCAATTGAGAAGGACGGCGGACCGGAGAAATTGCAGAGGAGTGTCTCTCATGGCCGCGTTGGAGACAGAGAACCAAAATTGAAAAAGCGAAGAAGAAGAAGAAGAAATCTTATTCGAATTCTGAAGAGAGCCATATCCAAAACCATCTCTCGAAACAAGCATAATGAAAATGGTGCAGCTTCTGCTGGTCAGACTCAGAGCAGTGTCCATTTGAGCAGCCATGGGAGCTTAGCGCAGGAAGACGACGGCGATTACTTTCTCGGCGGTCAGAGTGTGCAGTGGGCGCAGGGGAAGGCCGGTGAGGATAGAGTTCACGTGGTGATATCAGAGGATAATGGTTGGGTTTTCGTCGGAATTTATGACGGATTCAACGGCCCCGATGCTCCTGATTACTTACTTGCTAATCTCTACACTGCTGTTCTTAAAGAGCTCAAGAGTAGTTTGATTTGGAGTGATAAGTTCGATTCAACTGCAACTTCGTCTTCCATGAACTCATCCAATTCTGCTTCAACTGAGGAAGACGATCATAGAACAACCCACATGAAAAATCAAGAGAATGATCATCAATCTACAGAGAACATCTTACCCGAAAATGAGGTCGTGAATTTGGAGGCCGATTTGGTGAGGAAAAGAGAGAGAGTTCACAATACGAATTATAGGACGAGTCAACTGATGAAGAAGGCCGATCAAAATCCGAAGTATTGGAAATGTGAATGGGAAAGGGAAAGATTAGGATTTGAGGGGAAGTTGAACAATAATAGACAAATAGATCACCACCAAATATGGGATGAATCAACGGCAATCAATCATTCTGAGGTGCTGAATGCTCTGTCTCAAGCATTGAGAAAAACAGAGGAAGCATATCTGCAAAATGCAGACAAGATGGTCACAAGAAATCCTGAGCTAGCTCTAATGGGTTCTTGTGTTTTGGTGATGTTGATGAGAGGAGAAGATGTCTACTTGATGAATGTAGGAGACAGCCGAGCTATTGTAGCACAGCAATTCGAACCGGATTTCGGGACTGGAAAACCATACAGAGACTTGGAGAGAATCAATGAAGGAACAATACGAGTATTTGAATCCTCTAATGGAGTAGAGTTTGAAAAATTAAAAGCATTGGCTTCCCATCAGCTTACAATGGACCACAGCACTTACATAGAGGAGGAAGTTCAGAGGATCAAGAATGCTCATCCTGACGACGCTTCCGCAATTATGAATGACAGGGTGAAAGGTTATTTGAAGATCACGCGAGCATTCGGAGCTGGCTTTCTAAAACAGCCAAAGTGGAATGATGCATTGCTAGAGATGTTCAGAATAGACTATGTGGGAAATTCACCTTATATCACCTGTGATCCAACTCTATGTCATTACAAACTCAGCCCAACAGACAGATTCTTGATATTGTCCTCTGATGGACTCTACCAGTACTTTACCAATGAAGAAGCTGTTGCTCAAGTAGAGTCCTTCATTGCTTCTTTTCCTGAAGGAGATCCTGCTCAAAATCTAATTGAAGAAGTATTGTTCCGAGCAGCTAAAAAATACGGAATGGACTTCCATGAACTGCTTGATATCCCACAAGGGGAGCGACGGAAGTACCATGATGACGTTTCGGTAATCATCATTTCATTTGAAGGAAGAATGTGGCATTCGTTGATGTAA 2142 45.7 MGNRIGKIGHCFAGAGDISRRYDPADIISDPQDGGFGHSFYYLPPDPHTLSSSKDFSDDYISPVTFFRSISGASVSANVSTPLSTSLVDLYPYSTTFDRAAAFDCTNSFASVPLQPVPRHSVSGNSGGFPSSGPLERGFLSGPLAARSFESGPIDRVVHSGPIEKDGGPEKLQRSVSHGRVGDREPKLKKRRRRRRNLIRILKRAISKTISRNKHNENGAASAGQTQSSVHLSSHGSLAQEDDGDYFLGGQSVQWAQGKAGEDRVHVVISEDNGWVFVGIYDGFNGPDAPDYLLANLYTAVLKELKSSLIWSDKFDSTATSSSMNSSNSASTEEDDHRTTHMKNQENDHQSTENILPENEVVNLEADLVRKRERVHNTNYRTSQLMKKADQNPKYWKCEWERERLGFEGKLNNNRQIDHHQIWDESTAINHSEVLNALSQALRKTEEAYLQNADKMVTRNPELALMGSCVLVMLMRGEDVYLMNVGDSRAIVAQQFEPDFGTGKPYRDLERINEGTIRVFESSNGVEFEKLKALASHQLTMDHSTYIEEEVQRIKNAHPDDASAIMNDRVKGYLKITRAFGAGFLKQPKWNDALLEMFRIDYVGNSPYITCDPTLCHYKLSPTDRFLILSSDGLYQYFTNEEAVAQVESFIASFPEGDPAQNLIEEVLFRAAKKYGMDFHELLDIPQGERRKYHDDVSVIIISFEGRMWHSLM 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30953251 30956043 - MELO3C003131.2.1 Cme08g02405 336668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02405 713 MobiDBLite consensus disorder prediction 331 348 - -
Cme08g02405 713 MobiDBLite consensus disorder prediction 159 184 - -
Cme08g02405 713 SMART PP2C_4 236 702 IPR001932 -
Cme08g02405 713 Gene3D - 223 710 IPR036457 -
Cme08g02405 713 MobiDBLite consensus disorder prediction 210 236 - -
Cme08g02405 713 Pfam Protein phosphatase 2C 415 676 IPR001932 -
Cme08g02405 713 PANTHER PROTEIN PHOSPHATASE 2C 20 711 IPR015655 GO:0004722|GO:0006470
Cme08g02405 713 SUPERFAMILY PP2C-like 258 706 IPR036457 -
Cme08g02405 713 ProSiteProfiles PPM-type phosphatase domain profile. 247 704 IPR001932 -
Cme08g02405 713 MobiDBLite consensus disorder prediction 212 236 - -
Cme08g02405 713 CDD PP2Cc 423 704 IPR001932 -
Cme08g02405 713 MobiDBLite consensus disorder prediction 155 194 - -
Cme08g02405 713 MobiDBLite consensus disorder prediction 317 354 - -
Cme08g02405 713 PANTHER PHOSPHATASE 2C, PUTATIVE-RELATED 20 711 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02487 Cme-Chr6:31828616 Cme08g02405 Cme-Chr8:30953251 3.41E-35 dispersed
Cme08g02405 Cme-Chr8:30953251 Cme08g00965 Cme-Chr8:6344338 1.42E-37 dispersed
Cme06g00729 Cme-Chr6:4815748 Cme08g02405 Cme-Chr8:30953251 2.31E-14 transposed
Cme11g01301 Cme-Chr11:19824272 Cme08g02405 Cme-Chr8:30953251 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02405 - - csv:101213757 1377.46