Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02411 ATGGCTTCTTCTCTTTCTCTCCTCTTCTCCCTCGCCTTCTCCTCCCTCTTTCTCCTCTCTCACGCCAGAATCCCCGGCGTCTACTCTGGCGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGATGCCTCCGGAACCATGGGTGGTGCTTGTGGGTATGGCAATCTCTACAGCCAGGGCTATGGCGTCAACACAGCTGCTCTCAGTACTGCTCTCTTCAACAATGGCCTCAGCTGTGGTGCTTGCTTTGAGATCAAGTGTGCTAATGACCCTCGATGGTGCCATCCTGGTAGCCCTTCTATCTTCATTACCGCTACCAATTTTTGTCCCCCTAACTTTGCTCTTCCTAATGACAATGGCGGTTGGTGTAACCCTCCTCGCACTCATTTCGACCTCGCTATGCCTATGTTCCTCAAGATCGCTGAGTACCGCGCTGGAATCGTACCTGTCTCTTACCGCCGGGTTCCATGTAGGAAACAAGGAGGAATCAGGTTCACAATCAACGGTTTCCGTTACTTCAATTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTCAGCGTAAAAGGATCAAACACCGGTTGGATGAGCATGAGTCGTAACTGGGGGCAAAATTGGCAATCCAACGCTGTTTTAGTGGGCCAGACCCTTTCCTTCCGCGTCACCGGCAGTGACCGTCGTACTTCAACTTCATGGAACGTGGCTCCTTCTAATTGGCAGTTCGGTCAGACATTCACGGGAAAGAATTTCCGCGTAGCGGTGGTGAGTTTGAAAATTACCGCTGTTGAAAACAGTGTAGGGGAGGCTGAAGTGGCTGCAATAGTAAATGTGTAG 855 52.51 MASSLSLLFSLAFSSLFLLSHARIPGVYSGGPWQDAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHPGSPSIFITATNFCPPNFALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSNTGWMSMSRNWGQNWQSNAVLVGQTLSFRVTGSDRRTSTSWNVAPSNWQFGQTFTGKNFRVAVVSLKITAVENSVGEAEVAAIVNV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30997262 30999218 - MELO3C003134.2.1 Cme08g02411 336674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02411 284 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cme08g02411 284 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cme08g02411 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cme08g02411 284 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Cme08g02411 284 Gene3D - 21 161 IPR036908 -
Cme08g02411 284 Gene3D - 165 257 IPR036749 -
Cme08g02411 284 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cme08g02411 284 Pfam Lytic transglycolase 68 155 IPR009009 -
Cme08g02411 284 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cme08g02411 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cme08g02411 284 PANTHER EXPANSIN-A15 3 258 IPR002963 GO:0009664
Cme08g02411 284 SMART dpbb_1 68 155 IPR007112 -
Cme08g02411 284 PANTHER EXPANSIN 3 258 - -
Cme08g02411 284 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02660 Cme-Chr6:33714951 Cme08g02411 Cme-Chr8:30997262 1.41E-96 dispersed
Cme08g01258 Cme-Chr8:9043115 Cme08g02411 Cme-Chr8:30997262 3.96E-113 dispersed
Cme08g02411 Cme-Chr8:30997262 Cme09g00465 Cme-Chr9:4473432 1.46E-155 dispersed
Cme09g01018 Cme-Chr9:14292204 Cme08g02411 Cme-Chr8:30997262 1.99E-89 dispersed
Cme09g01702 Cme-Chr9:21654358 Cme08g02411 Cme-Chr8:30997262 1.84E-93 dispersed
Cme07g01294 Cme-Chr7:18161533 Cme08g02411 Cme-Chr8:30997262 5.24E-101 transposed
Cme11g01811 Cme-Chr11:26286236 Cme08g02411 Cme-Chr8:30997262 6.13E-94 transposed
Cme10g00899 Cme-Chr10:6397055 Cme08g02411 Cme-Chr8:30997262 2.55E-169 wgd
Cme11g01314 Cme-Chr11:19942997 Cme08g02411 Cme-Chr8:30997262 9.91E-170 wgd
Cme12g00171 Cme-Chr12:1665953 Cme08g02411 Cme-Chr8:30997262 1.83E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02411 - - csv:101212872 522.316