Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02424 ATGGAAGCCACCGTCTTCCTCACCTTAATTCTTTTGATTTCCATTTCTCCAGCTTCTGCAGATCAAAGCTTCATCTTTAATGGCTTCAATCCCCGTGATCTCATCCTCGATGGCGTCGCCGAAGTAACCTCCGATCGTCTTTTGAGACTCACCAACGACTACGACCAACAAATCGGCCACGCCTTTTACCCCAATCCCATCTCCTTCAAAACCTCATCAAACAATTCCTCACTTTCCTCCTTCTCTGCAACTTTCGTCTTTGCTATAATATCAGAATATGACGATCTCGGCGGCCATGGAATCGCCTTCGTCGTTTCTCCGACTAGAGGTCTCCCCGGAGCTCGGCCAAGCGAAAGCCTCGGTCTATTCAACGAGTCCAACAACGGGAAAGAAACGAATCACATCTTTGCCGTTGAACTCGACACGATTCAGAATCTCGATCTTAAAGACATCAACAAGAACCACATCGGAATCAATATAAACGGACTAATGTCAGAACAAGCGGAGCGAGCAGGGTATTGGGTCGGGGGCGAATTTAGAAACTTGACGTTAATCAGTGGCGAACGGATGCAAGTTTGGGTCGAATACGATGGACTCGAAAAGCAAATTAACGTTACCTTGGCTCCAATTGAAATCAGGGATAAACCCAAAATCCCTCTCTTATCTTACCGGCGAGACTTATCGTCCGTCATCAACGACATCATGTACATCGGATTCTCATCCTCAACAGGCTCCATTACGACGTCGCATTACGTTTTAGCTTGGAGTTTCAACGTCGATGGCGAAGCACAGAGGATTACTCTGTCTCAACTCCCCAAGCTTCCACCACGTCCAAGAAAAAAACAGAGGCGATCCAAATTCTTAACAATCGGTTTACCGTTGATTTGCGTTTCATTAGCTTTAATGACAGTTTTGGGGGTGATTTATTTCATATACCGGAGACGGAAATTCGCTGAGATTCTAGAGGATTGGGAGCTGGAATACGGACCACAAAGATTCAAATACAAGGATTTATACAGAGCAACAAAGGGATTCAGAGAAAAAGAATTTCTGGGATTCGGTGGATTCGGTAGAGTATACAAAGGGGTATTACCAAATTCGAAAATCGAAGTAGCAGTGAAGAGAATCTCTCACGAATCAAGACAGGGAATGAAGGAATTCGTGGCGGAGATAGTGAGTGTAGGGAGACTCCGGCACCGGAACCTGGTGGCGCTGTTGGGGTATTGCCGGAGGAAAGGTGAGCTGTTTTTGGTGTATGATTATATGAGAAATGGAAGCTTGGATGCGTATTTACATGAGTGGCCGGAGATAACGATAAATTGGGAACAGAGGTTTGAGATAATAAAAGGAGTGGCGTCGGGATTGTTTTATCTTCATGAACAGTGTGAGAAAGTGGTGATTCATAGAGATGTGAAAGCGAGTAATGTGTTGCTTGATGATGAGTTCAATGGAAGATTGGGGGATTTTGGTTTGGCTAAAATGTATGATCGTGGTGCTGATCCTCGAACCACTCATGTCGTTGGAACTCTTGGGTATCTAGCGCCAGAGCACATAAGAACAGGGAGGGCCACAACAAGAACAGACGTTTACGCATTCGGGGCTTTTCTTCTTGAAGTAGCCTGCGGAAGAAGGCCTATTCATCCTCAAGAAGACTCCGACGATTTCATTTTAATGGATTGGGTTCTATCTTCTTGGTCCAACGGCAACATTCTCCGGACTGCCGATCCCAAATTGGGTGGCAATTTCGAACCTTCACAGCTCGAATTGGTTCTCAAACTCGGGTTGCTCTGTTCCCACTCCTCCCCTGCCGTTCGTCCCACCATGTACCAGGTTCTGCAGTATTTGCAGGCCGATGCGCCGCTGCCGGACCTTGCCTCCCTCCGATGGCGCCTTTCCGGAAGTGGGTTTTTCAATTTGAGGCCTCGCGATGGCGAGGGCGATGGGTTGGATGATTTTACGGTGTCTTATCCGTTATCTACGGAAAGGAATGTGACGAGTTCTTCTTCGGTTGCGGAGTCTATTCTGTCCGAAGGCCGCTGA 2040 46.91 MEATVFLTLILLISISPASADQSFIFNGFNPRDLILDGVAEVTSDRLLRLTNDYDQQIGHAFYPNPISFKTSSNNSSLSSFSATFVFAIISEYDDLGGHGIAFVVSPTRGLPGARPSESLGLFNESNNGKETNHIFAVELDTIQNLDLKDINKNHIGININGLMSEQAERAGYWVGGEFRNLTLISGERMQVWVEYDGLEKQINVTLAPIEIRDKPKIPLLSYRRDLSSVINDIMYIGFSSSTGSITTSHYVLAWSFNVDGEAQRITLSQLPKLPPRPRKKQRRSKFLTIGLPLICVSLALMTVLGVIYFIYRRRKFAEILEDWELEYGPQRFKYKDLYRATKGFREKEFLGFGGFGRVYKGVLPNSKIEVAVKRISHESRQGMKEFVAEIVSVGRLRHRNLVALLGYCRRKGELFLVYDYMRNGSLDAYLHEWPEITINWEQRFEIIKGVASGLFYLHEQCEKVVIHRDVKASNVLLDDEFNGRLGDFGLAKMYDRGADPRTTHVVGTLGYLAPEHIRTGRATTRTDVYAFGAFLLEVACGRRPIHPQEDSDDFILMDWVLSSWSNGNILRTADPKLGGNFEPSQLELVLKLGLLCSHSSPAVRPTMYQVLQYLQADAPLPDLASLRWRLSGSGFFNLRPRDGEGDGLDDFTVSYPLSTERNVTSSSSVAESILSEGR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31130143 31132748 - MELO3C003146.2.1 Cme08g02424 336687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02424 679 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.1-LIKE 6 654 - -
Cme08g02424 679 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246
Cme08g02424 679 Pfam Protein kinase domain 345 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02424 679 CDD STKc_IRAK 351 616 - -
Cme08g02424 679 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 278 IPR013320 -
Cme08g02424 679 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Cme08g02424 679 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02424 679 Pfam Legume lectin domain 22 272 IPR001220 GO:0030246
Cme08g02424 679 Gene3D - 20 271 - -
Cme08g02424 679 Gene3D Transferase(Phosphotransferase) domain 1 422 627 - -
Cme08g02424 679 PANTHER - 6 654 - -
Cme08g02424 679 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02424 679 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Cme08g02424 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cme08g02424 679 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02643 Cme08g02424 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02424 Cme-Chr8:31130143 Cme09g00090 Cme-Chr9:677916 0 dispersed
Cme08g02424 Cme-Chr8:31130143 Cme08g02425 Cme-Chr8:31155081 0 tandem
Cme01g00326 Cme-Chr1:2465318 Cme08g02424 Cme-Chr8:31130143 1.41E-49 transposed
Cme04g02643 Cme-Chr4:32182873 Cme08g02424 Cme-Chr8:31130143 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65125 PF00069 Pkinase 2.10E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02424 - - csv:101205439 1224.15