Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02425 ATGGCATCTTCTTCTTTTCTTTTCATCAATTTTTTCTTATCTCTAATTTTTCTCTCCACACAAACCTTATCTTCTCACTACACCCAACTCTTCTACCCTGGTTTCAATGGATCCATCGACATAACTTTGAAAGAATCTGCAGAAATTGAAGGCAATGGAGTTTTGAGGCTAACCAGTCGTAATTACCGAAACATCATCGGCCAGGCCTTTTACTCCTCTCCAATCCAGTTCAAGAACTCCTCCAGCGACGGTGACGGTCGAGCCTTTTCTTTCTCCACTTGTTTTGTCTTCTGCATCATCCCCGAGTACGAAGGCGGCCATGGATTTACTTTCGCCATTGTCCCTTCTAAAGATCTCAAAGGTATTTCTCAGAGGTTTCTTGGACTCTTCAACGAATCCAATTTCTATGGGAAATTTTCAAATCATATCTTCGCTGTGGAATTCGATACAATCTTCGATGTTGGGATCAAAGATATTGATAACGATCATGTAGGGACTGATTTAAACAGCTTGATTTCGAATGTCTCTGTTCACGCTGCTTATTTTGACGAATTGGGTAAAGTTCATAATCTCTCACTTCAAAGTGGGAAGCCGATTAAAGTTTGGATTGATTATGATTCTGATGAAATCACTCTCCATGTTACGATTTCCCCTTTTAATTCAAAACCCAGAAAGCCAATTCTGTCTTACAGAGTGAATCTTTCATCGGTTTTTTATGAAGAAATGTACATTGGATTTACTGCATCAACAGGCATACTTTCTAGAAGCTCGCATTACATTTTAGGGGAGAAAATCAGTCTCCCTGTTTATGTATCTATAACAACTGCGAGTGTTTTTGTGATCTCTGTTTTCGCTTTGGGTTTTTATCTCTTACGAAGGTACAAAAAATCCGAAGAAATCGAACAGTGGGAGCTTCAATTAGGACCTCACCGATATTCCTACAGAGAATTAAAAAAAGCTACAAGAAATTTCAGCGAGAAGGAGCTTCTTGGGTATGGCGGATCTGGGAAAGTATACAGAGGAATCCTTCCCATTTCGAAAACCCAAATCGCCGTTAAGCGAATATGTCACGATTCAAAACAGGGTCTCCGGGAATTCATGACGGAGATCGCCACAATTGGAATGCTCCGTCACAGGAATCTGGTTCAGTTGTTAGGATGGTGTCGGCGGGAACGAGATCTGCTTCTTGTTTACGAGTTTATGGAGAATGGGAGCTTAGATAATTACTTATTCGACGATCCAAGAACGATTTTGAATTGGGAACAGAGATTCAAAGTGATTAAGGGAGTTGCCTCTGCTCTGCTTTATCTTCACGAGGGGTATAAACAGGTGGTGATTCATAGAGACGTGAAGGCAAGCAATGTGTTACTAGACGGCGAATTAAATGGAAAATTAGGGGATTTCGGGCTGGCAAAGGTGTACGAACACGGATCGGCACCGGATACGACTCGGGTGGTCGGAACTTTGGGGTATTTAGCACCGGAGCTGCCAAGAACAGGGAAATCAACGACGAGCTCCGATGTGTACGCGTTTGGGGCTTTAATGCTGGAAGTGGCATGTGGGCGGCGGCCGGTGGAGATGAAGGCGTTGCCGGAGGAGATGACGTTGGTGGATTGGGTTTGGGATAAATACAGAGAAGGGCAGGTTTTGTCGGTCGTGGATTCAAAGATTCAGGGAGTTTACGACGAGGTTGAGGTGACGATGGTGTTGAAGTTAGGGGTTATGTGTTCGAATAATGAGCCGGAGCAGAGGCCGAGTATGAGGCAGGTAGTGCGGTGTTTGGACGGAGAAATTGGCGTGGCCGATGAGTGGAAAGCGCCCGGTGGCGGAAGTAATGGCGGCGCGGTGGGGGAATTTCTTGGGTCATTTACGTCTACGTCCATTAGTGGAGAAAGCTCCTGTTAA 1905 44.3 MASSSFLFINFFLSLIFLSTQTLSSHYTQLFYPGFNGSIDITLKESAEIEGNGVLRLTSRNYRNIIGQAFYSSPIQFKNSSSDGDGRAFSFSTCFVFCIIPEYEGGHGFTFAIVPSKDLKGISQRFLGLFNESNFYGKFSNHIFAVEFDTIFDVGIKDIDNDHVGTDLNSLISNVSVHAAYFDELGKVHNLSLQSGKPIKVWIDYDSDEITLHVTISPFNSKPRKPILSYRVNLSSVFYEEMYIGFTASTGILSRSSHYILGEKISLPVYVSITTASVFVISVFALGFYLLRRYKKSEEIEQWELQLGPHRYSYRELKKATRNFSEKELLGYGGSGKVYRGILPISKTQIAVKRICHDSKQGLREFMTEIATIGMLRHRNLVQLLGWCRRERDLLLVYEFMENGSLDNYLFDDPRTILNWEQRFKVIKGVASALLYLHEGYKQVVIHRDVKASNVLLDGELNGKLGDFGLAKVYEHGSAPDTTRVVGTLGYLAPELPRTGKSTTSSDVYAFGALMLEVACGRRPVEMKALPEEMTLVDWVWDKYREGQVLSVVDSKIQGVYDEVEVTMVLKLGVMCSNNEPEQRPSMRQVVRCLDGEIGVADEWKAPGGGSNGGAVGEFLGSFTSTSISGESSC 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31155081 31157108 + MELO3C003147.2.1 Cme08g02425 336688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02425 634 PANTHER - 11 608 - -
Cme08g02425 634 Pfam Legume lectin domain 30 262 IPR001220 GO:0030246
Cme08g02425 634 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 267 IPR013320 -
Cme08g02425 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cme08g02425 634 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 11 608 - -
Cme08g02425 634 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02425 634 Gene3D Phosphorylase Kinase; domain 1 309 400 - -
Cme08g02425 634 Pfam Protein tyrosine and serine/threonine kinase 327 594 IPR001245 GO:0004672|GO:0006468
Cme08g02425 634 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524
Cme08g02425 634 SMART serkin_6 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02425 634 Gene3D - 28 269 - -
Cme08g02425 634 CDD lectin_legume_LecRK_Arcelin_ConA 28 262 IPR001220 GO:0030246
Cme08g02425 634 Gene3D Transferase(Phosphotransferase) domain 1 401 604 - -
Cme08g02425 634 SUPERFAMILY Protein kinase-like (PK-like) 300 594 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02644 Cme08g02425 CCT
Cme04g02644 Cme08g02425 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02644 Cme-Chr4:32186021 Cme08g02425 Cme-Chr8:31155081 0 dispersed
Cme04g02645 Cme-Chr4:32188876 Cme08g02425 Cme-Chr8:31155081 0 dispersed
Cme08g02425 Cme-Chr8:31155081 Cme09g00090 Cme-Chr9:677916 6.16E-161 dispersed
Cme08g02424 Cme-Chr8:31130143 Cme08g02425 Cme-Chr8:31155081 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65126 PF07714 PK_Tyr_Ser-Thr 5.10E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02425 - - csv:101205197 1115.14