Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02430 ATGGAAACCCATCTTCCCTCCCTGTTTTTTCTTCTCATTTTCCTCTCATTTCTCCTCTGCTGCCCGGCCAAGCGCTGTCCGGACTGCGGCCGCACGCCGGTGCCGTACCCACTCAGCACGAGTCCGGATTGCGGTGACCCTCTTTACAGAGTCCGGTGCGCCGCCGCCGAGCTCTGGTTTGAGTCTGTTAATGGGTCTTCGTATTTGATCACTTCCGTTAATCCGGTAGCTCGGAAGCTGATCATCCGGCCGCCGGGGTTGGCCAAAAACTCCTGCGTGTCATCGGATTTTGGAACCCATGGTTTTTGGCTCGACACGCGCCTTCCTTTCACCATTTCCGAAAGAAACACGGTTTTGCTCTATAACTGTTCGATGGAAGTTCTGGAAAATAATTGGAACTGTTCACCCGATAGCGTCTGTCATGACTTTATCAAGCAGAATCCGGTGGCAATGGCAGCGTGTAAGGCGGCGCCGACGTGCTGTTGGTACACGAGTGGCGGTTCCTTGACTGCGTATAGAATCAGGGTGCGGAAGGAGCGGTGTTCGGCTTATGAATGTTTCGTGAATTTGGGTGGTTCTGGTCCGGCGAAGAAGTGGCCGGAACCTGGGGTGGAGATTCAATGGGCGCCACCGCGAGAACCGCCGTGTCGTGTGGCTATGGACTGCCGGAATTGGGAGAATTCTGCTTGTTTGCTGGACCATACAAACGCCAAGCAGATGAGATGCTTATGTAAGGTGCCTTTCAAGTGGGATCCTGTAAATGGATTGTGTAATGGCAATAATTTGAAAATACAGAACAAGACAATTCATAAGAAGCACAAGAAGATGCCTGTTATTCTTGGAGGAGCAATGGCGGGAGTATTTTTAATGGTGATTGGAGGCTCAATCATGTTTGTAATTTCCAAAAGACGTGGACAGCTTCCAAAAGGGAACGAGCTGAGTTCAAAACAAGTTCGTGAAGTGATTCTAACTGCGAACAGCAGTGGAAAATCGGCGAGGATGTTCACAACCAAAGAGATAGCGAAGGCCACAAACAACTTCTCCAAAGAGAACTTGCTTGGTTCTGGTGGCTATGGGGAAGTCTTCAAAGGCAATCTAGAAGATGGAACTTTAATAGCTGTTAAACGTGCCAAGTTGGGTAGCATGAAGGGAATTGATCAAATCCTAAACGAGGTTCGGATTCTTTGTCAGGTGAACCATCGATACCTTGTTCGTCTACTCGGATGTTGTCTCGAACTCGAGCAACCACTCTTAATATATGAGTACATCTCAAATGGGAACCTATTTGATCACCTTCATGGGAATACTAGTTCAAGCAAGTGGCCACCATTGACATTGAGTCGTCGACTCTACATTGCTCGGCAAACAGCCGATGGCCTTGCTTATCTCCACACTTCAGCCATGCCTCGAATCTATCACCGAGACATAAAGTCAAGCAACATTCTACTAGATGAGAAGTTGAATGCCAAAGTAGCTGATTTTGGGCTGTCTAGATTGGCTATAACTGAATCAAGCCATATTACAACTGGGGCTCAGGGAACATTAGGTTATCTAGACCCAGAATATTACCTAAACTTTCAATTGACAGACAAGAGTGATGTTTACAGTTTTGGAGTTGTCATGTTGGAGCTATTGACTTCTGAGAAAGCCATTGATTTTAATAGAGAAGAGGAAGATGTAAATTTAGTAGTTTATATCAAGAAGATCATCCAAGAAGACAGATTGATGGAGGTTGTTGATCCTGTGATTAAACATAGAGCAAGCAGAGTTGAAGTGGAGATAATCAAAGCATTGGGGTCTTTAGCAGCAGCTTGCTTGGATGAAAAGAGGCAGAATAGACCTACCATGAAAGAAGTTGCTGATGAGCTAGCCAACATTATTTCCATTCTTAATAACGAGATCCCTTTTCTCTTTCCTATTTCTCCAAGTATAGACCTTAGTAATTGGGGCTGA 1953 45.98 METHLPSLFFLLIFLSFLLCCPAKRCPDCGRTPVPYPLSTSPDCGDPLYRVRCAAAELWFESVNGSSYLITSVNPVARKLIIRPPGLAKNSCVSSDFGTHGFWLDTRLPFTISERNTVLLYNCSMEVLENNWNCSPDSVCHDFIKQNPVAMAACKAAPTCCWYTSGGSLTAYRIRVRKERCSAYECFVNLGGSGPAKKWPEPGVEIQWAPPREPPCRVAMDCRNWENSACLLDHTNAKQMRCLCKVPFKWDPVNGLCNGNNLKIQNKTIHKKHKKMPVILGGAMAGVFLMVIGGSIMFVISKRRGQLPKGNELSSKQVREVILTANSSGKSARMFTTKEIAKATNNFSKENLLGSGGYGEVFKGNLEDGTLIAVKRAKLGSMKGIDQILNEVRILCQVNHRYLVRLLGCCLELEQPLLIYEYISNGNLFDHLHGNTSSSKWPPLTLSRRLYIARQTADGLAYLHTSAMPRIYHRDIKSSNILLDEKLNAKVADFGLSRLAITESSHITTGAQGTLGYLDPEYYLNFQLTDKSDVYSFGVVMLELLTSEKAIDFNREEEDVNLVVYIKKIIQEDRLMEVVDPVIKHRASRVEVEIIKALGSLAAACLDEKRQNRPTMKEVADELANIISILNNEIPFLFPISPSIDLSNWG 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31201131 31206484 + MELO3C003153.2.1 Cme08g02430 336693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02430 650 SUPERFAMILY Protein kinase-like (PK-like) 330 623 IPR011009 -
Cme08g02430 650 CDD STKc_IRAK 353 626 - -
Cme08g02430 650 ProSiteProfiles Protein kinase domain profile. 347 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02430 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cme08g02430 650 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 15 25 629 - -
Cme08g02430 650 Gene3D Phosphorylase Kinase; domain 1 308 422 - -
Cme08g02430 650 Gene3D Transferase(Phosphotransferase) domain 1 423 634 - -
Cme08g02430 650 Pfam Protein kinase domain 348 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02430 650 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Cme08g02430 650 SMART serkin_6 347 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme08g02430 650 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 629 IPR045274 GO:0007166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00184 Cme-Chr3:2239235 Cme08g02430 Cme-Chr8:31201131 0 dispersed
Cme04g02455 Cme-Chr4:31119687 Cme08g02430 Cme-Chr8:31201131 0 dispersed
Cme08g02430 Cme-Chr8:31201131 Cme03g00455 Cme-Chr3:6494386 5.02E-90 dispersed
Cme08g02430 Cme-Chr8:31201131 Cme08g00521 Cme-Chr8:3232224 1.76E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65127 PF00069 Pkinase 1.20E-45 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02430 - - csv:101204219 1227.23