Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02450 ATGTCCCACAACAAAGCCGGAGAGACAAGCTTAGAATTGGAATTGCTTTTTCATCATAATTACCCTTCCTCCGCCCCCGCCCTCCCTCCTCTCCCCTCCGACCAACAACCGCCACCCTTATCCCTTGACCTTAACCTCCAACACCGTTATGCCTCCTTTCGTTCCACTTCCCTTTTAAAAACCTCTAAATTCTTCAAGCCAGCTCAGCAACTCCTCCATGATTTATTTGATTACGCCGCCCCTAACATCTCCGACGACAAGCTCCTGCCGGATTCCGCCGTTTTTGACTCCTTGGATGGTGATATTCCCACCGCCCCCGCGGCTGATGAAACCCACACCACAAAATCTAGGCTTATTACCATGCTTCACGAGGTTTATAGAAGATATAAGCTATACTATCAGCAAATGCAAGCCGTGGTTACGACATTTGAGTACGCTGCAGGGCTTGGCAATGCAGCTCCCTATGCAAACTTAGCCATAAAAGCCATGTTTAAGCACTTCAGATTCTTAAAAAATGCCATAGCCGACCAGCTCCAATTCAACAAGCAGCAGCAGCAGCAACCAAACCCTTATTCTCAAAGATCTATTCACAACCACGGTCCCGGATTCCTTGATCACCAACCCGTCTGGCGCCCGCAGAGAGGCCTCCCCGAGAGCGCCGTCACCATCCTCCGAGCTTGGCTCTTTGAGCACTTCCTTCATCCTTATCCTACGGATACAGATAAGCTCATGTTGGCCAACCAGACTGGACTCTCGAGAAGTCAGGTATCAAACTGGTTCATCAACGCAAGAGTGAGACTTTGGAAACCAATGGTTGAAGAAATCCATATGTTAGAAACAAGGCAAGCTCAAAAATCTCAGCAAAAGGAAGACAAGAACAACAATAACAATAATATTGAAAATAATAGTGTCTTAAACAACATCAACAACAACAACAATCCTCTTTCCTCCACAAACGAATCCTTACTAAAACCTCACCACAACAATAATGCATCTTCTTCAAACCACCACCACCATCCTTCTCTAGATTTGTCCAACACCAATTTCTTTCCCACCCACCACCCTCACGCCGCCACCGGCAACATTTCCTTAACTCTCGGCCTCCACCAGAACCACCCTGGCGGTATCGCTCTCACGGAACCATTTCCCATCAATGCAGCTCACCATTTTAACCTTGGCTTAGAAGCCAACGGTGAAGGGTTTGTAAATGAGTGGTTTTGA 1221 47.17 MSHNKAGETSLELELLFHHNYPSSAPALPPLPSDQQPPPLSLDLNLQHRYASFRSTSLLKTSKFFKPAQQLLHDLFDYAAPNISDDKLLPDSAVFDSLDGDIPTAPAADETHTTKSRLITMLHEVYRRYKLYYQQMQAVVTTFEYAAGLGNAAPYANLAIKAMFKHFRFLKNAIADQLQFNKQQQQQPNPYSQRSIHNHGPGFLDHQPVWRPQRGLPESAVTILRAWLFEHFLHPYPTDTDKLMLANQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKSQQKEDKNNNNNNIENNSVLNNINNNNNPLSSTNESLLKPHHNNNASSSNHHHHPSLDLSNTNFFPTHHPHAATGNISLTLGLHQNHPGGIALTEPFPINAAHHFNLGLEANGEGFVNEWF 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31375544 31380573 - MELO3C003175.2.1 Cme08g02450 336713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02450 406 Gene3D - 213 275 - -
Cme08g02450 406 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
Cme08g02450 406 MobiDBLite consensus disorder prediction 181 209 - -
Cme08g02450 406 MobiDBLite consensus disorder prediction 281 348 - -
Cme08g02450 406 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 48 386 - -
Cme08g02450 406 Coils Coil 282 302 - -
Cme08g02450 406 SMART HOX_1 210 274 IPR001356 GO:0003677
Cme08g02450 406 MobiDBLite consensus disorder prediction 181 196 - -
Cme08g02450 406 MobiDBLite consensus disorder prediction 289 348 - -
Cme08g02450 406 SUPERFAMILY Homeodomain-like 212 277 IPR009057 -
Cme08g02450 406 CDD homeodomain 210 271 IPR001356 GO:0003677
Cme08g02450 406 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 48 386 - -
Cme08g02450 406 SMART prehox3 53 176 IPR006563 -
Cme08g02450 406 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Cme08g02450 406 Pfam Associated with HOX 59 175 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02662 Cme08g02450 CCT
Cme04g02662 Cme08g02450 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02450 Cme-Chr8:31375544 Cme12g00421 Cme-Chr12:6337581 3.07E-69 dispersed
Cme04g02662 Cme-Chr4:32282406 Cme08g02450 Cme-Chr8:31375544 5.70E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41891 PF07526 POX 8.50E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02450 - - csv:101221147 688.723