Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02469 ATGGCAGAACAAGTTCAAGTCTTCGGTTTCTGGGAAAGTCCTTTTAGTCGCAGAGTGGAGCTAGCTCTCAAACTCAAAGGCGTAGAATACCAATACTTTGAAGAAGATTTGCCCCATAATAAGAGTGATTTGCTTCTCAAATACAACCCAATTCACAAGAAGGTCCCTGTTCTACTCCACCATGGTAAACCCATTGCTGAGTCTCTTGTGATTTTGGAATACATTGATGATGTCTGGAAAGAAAATTATCCCATCTTGCCCCATCATCCCCACCAAAGAGCTCTTGCCAGATTCTGGGCTAAGTTTATCGACGACAAGGTCGTGGTTGCAGTAGTGAAGGCTGCTGGAAGCAGAGGAGAAGATAGAGAGAAGGCTATAGAAGAGGCAAGGGAAGCATTAGAAACACTTGAGAAAGAGATTGAAAAAAGCAATAAATTGTTTGGAGGAGATGATATTGGGTTTGTGGACATTGTTGGGACTGTGATTGCTGGTTGGATTCCTGCGATTGAAGAATGCTTTGGGTTTCAGCTGCTTACAACTGATAACTTCCCTAACCTAATCAAATGGAGTGATCAGCTTGCTAACCATTCCATTGTCAACCAGATTCTCCCTCCAAAAACTGAGATTGTTGCCTTTATGAAAGCTAATTGGAAATTTTAA 660 41.82 MAEQVQVFGFWESPFSRRVELALKLKGVEYQYFEEDLPHNKSDLLLKYNPIHKKVPVLLHHGKPIAESLVILEYIDDVWKENYPILPHHPHQRALARFWAKFIDDKVVVAVVKAAGSRGEDREKAIEEAREALETLEKEIEKSNKLFGGDDIGFVDIVGTVIAGWIPAIEECFGFQLLTTDNFPNLIKWSDQLANHSIVNQILPPKTEIVAFMKANWKF 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31625406 31626595 + MELO3C003188.2.1 Cme08g02469 336732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02469 219 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Cme08g02469 219 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
Cme08g02469 219 CDD GST_C_Tau 90 215 IPR045074 GO:0004364|GO:0006749
Cme08g02469 219 SFLD Main (cytGST) 2 215 - -
Cme08g02469 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 213 IPR010987 -
Cme08g02469 219 Coils Coil 119 146 - -
Cme08g02469 219 Pfam Glutathione S-transferase, C-terminal domain 106 195 IPR004046 -
Cme08g02469 219 PANTHER GLUTATHIONE S-TRANSFERASE U8 1 215 - -
Cme08g02469 219 Gene3D - 86 219 - -
Cme08g02469 219 SFLD Main.3: Omega- and Tau-like 2 215 IPR045073 -
Cme08g02469 219 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cme08g02469 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 215 IPR045073 -
Cme08g02469 219 CDD GST_N_Tau 5 79 - -
Cme08g02469 219 Gene3D Glutaredoxin 1 85 - -
Cme08g02469 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02465 Cme-Chr8:31585426 Cme08g02469 Cme-Chr8:31625406 1.37E-85 dispersed
Cme08g02466 Cme-Chr8:31602743 Cme08g02469 Cme-Chr8:31625406 1.14E-88 dispersed
Cme08g02469 Cme-Chr8:31625406 Cme08g02476 Cme-Chr8:31681575 1.46E-148 dispersed
Cme08g02468 Cme-Chr8:31618802 Cme08g02469 Cme-Chr8:31625406 2.17E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02469 K00799 - csv:105435246 394.43