Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02497 ATGATTGTTTCCATGGACTTAAATGCCTCGCCGGTGCCTGAAGACGATGAAGAGGCGTTTGAGAGGCATGAAGAGGTGTACATAGCTCCTGAGGAACATATAGTGACTGGTGTCAGTATAGCACGGCGGGAGCGAGAAGAAAGAAAAAGGCGGTTGAAGAGAGATCGCTCTCTCGAGAGACCGGTACATGAATACCAACAACCTGCACGGGATCAGTTTTACCCTTCTAAAAACCAAAAATCTGATAGAAACAGGCTTCCTCCAGGTTGGCTGGATTGCCCTGCATTTGGTCAAGAAATATGTTGGATGATTCCTTCCAAGGTTCCTTTGGGGGAATCCTTCAATGATTGTATAGCACCTGGTAAAAGATACTCATTTAAGCAAGTGATCCATCAGCAGAGAGTTTGGGGAAGAAAACTCGGTTTGGTGATTGATTTGACAAATTCTTATCGTTATTATACAACATCAGATTTGAATAAAGAGGGTATCAAGTATGTTAAGATTCCTTGCAAGGGGAGGGATTCTGTACCTGACAACAAGTCAGTCAATACATTCGTTTACGAGGTCATTCAGTTCATTTCTCGTCAGAAACAACAATCGAAGAAATATATTCTTGTCCACTGTACACATGGCCATAATCGCACTGGATATATGATCATAAATTATCTTGTGCGTGCACTATCCATTTCTGTTACCCAGGCTCTTAAAATGTTTTCTGATGCACGTCCTCCTGGAATTTACAAGCCAGACTACGTTGATGCGTTATATACCTTTTACCACGAAAGAAAACCTGATGCAGTTGTTTGCCCATCCACACCCGAGTGGAAGAGATCTTCGGATCTTGATCTCAATGGGGAAGCAGTTCCAGATGATGACGATGATGGAGGTCCTGCTGCTCTTTTGAATGAAAATCATGATGATGGTGCTCAAGTGATGACAAATGATGATGTTTTGGGTGATGAGATACCTGAAGACCAAGAACGTGGTTTGAAACAATTCTGCTATCAAATGCTTAAATTGAATCCTGGAGCAAGAGCAAATTTGCAATTTCCAGGGTCGCATCCAGTGTCTCTGAACAGAGACAATCTTCAACTGCTAAGGCAACGCTATTATTATGCCACATGGAAAGCTGATGGAACGAGATATATGATGCTAATTACCATGGATGGATGCTACTTGATCGACAGAGGTTTTAAATTTAGAAGAGTCCAAATGAGATTTCCGTACAGAAATGCAAATGATGGCCAAGTTGAGAAGATTCACCACTACACACTACTTGATGGAGAAATGATAATTGATACTATGCCAGACTCGCAGAAGCAAGAGAGAAGATATCTTATATATGATATGATGGCGATTAATTATGTTTCGGTCATTGAGCGTCCTTTCTACGAACGGTGGAAGATGCTTGAAAAAGAAGTGATTGAACCTCGCAATTTTGAGCGCCAGAATATTTATCAAAGCAGAAACCCGCATTATAGATATGACCTAGAGCCATTCAGGGTGAGGAGAAAAGATTTTTGGTTGCTCTCTACAGTTACCAAACTTTTGAAGGAGTTCATACCGAGGCTTTCTCATGATGCTGATGGTCTAATATTTCAGGGTTGGGATGATGCTTATGTTCCTCGAACACATGAGGGTCTTTTAAAGTGGAAATATCCGGAAATGAACTCAGTCGACTTCTTATTTGAGGTTTTGGGTGAAGATGATTCTCAGGTTCTTATTTTGTTTGAACGAGGAAAGAGGAAGACCATGGAAGGAAATCGGGTTAAGTTCAAAGATGGCGATCCCTCCTTTTATTCAGGAAAGATTGTGGAGTGCTCTTGGGATTCTGATGAGCAAGTATGGGTCTGCATGCGAATTCGGACAGACAAAACAACTCCAAATGATTTCAATACTTATAAAAAGGTAATGCGGAGCATTAGAGACAATATCACGGAGGAGGATTTGTTGAAAGAGATTCATGAGATCATACGCTTGCCCATGTATGCAGATAGGATAAGGAATGATAGTAAAGCGGCTCAACATACGAATTCAACACGACGGAGGTGA 2052 41.33 MIVSMDLNASPVPEDDEEAFERHEEVYIAPEEHIVTGVSIARREREERKRRLKRDRSLERPVHEYQQPARDQFYPSKNQKSDRNRLPPGWLDCPAFGQEICWMIPSKVPLGESFNDCIAPGKRYSFKQVIHQQRVWGRKLGLVIDLTNSYRYYTTSDLNKEGIKYVKIPCKGRDSVPDNKSVNTFVYEVIQFISRQKQQSKKYILVHCTHGHNRTGYMIINYLVRALSISVTQALKMFSDARPPGIYKPDYVDALYTFYHERKPDAVVCPSTPEWKRSSDLDLNGEAVPDDDDDGGPAALLNENHDDGAQVMTNDDVLGDEIPEDQERGLKQFCYQMLKLNPGARANLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRGFKFRRVQMRFPYRNANDGQVEKIHHYTLLDGEMIIDTMPDSQKQERRYLIYDMMAINYVSVIERPFYERWKMLEKEVIEPRNFERQNIYQSRNPHYRYDLEPFRVRRKDFWLLSTVTKLLKEFIPRLSHDADGLIFQGWDDAYVPRTHEGLLKWKYPEMNSVDFLFEVLGEDDSQVLILFERGKRKTMEGNRVKFKDGDPSFYSGKIVECSWDSDEQVWVCMRIRTDKTTPNDFNTYKKVMRSIRDNITEEDLLKEIHEIIRLPMYADRIRNDSKAAQHTNSTRRR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31882188 31894093 + MELO3C003222.2.1 Cme08g02497 336760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02497 683 MobiDBLite consensus disorder prediction 43 66 - -
Cme08g02497 683 PIRSF mRNA_capping_HCE 74 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cme08g02497 683 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 683 - -
Cme08g02497 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 108 265 IPR020422 GO:0006470|GO:0008138
Cme08g02497 683 CDD Adenylation_mRNA_capping 325 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cme08g02497 683 Gene3D DNA ligase/mRNA capping enzyme 313 550 - -
Cme08g02497 683 CDD RNA_5'-triphosphatase 89 256 - -
Cme08g02497 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 206 216 IPR016130 GO:0016311|GO:0016791
Cme08g02497 683 MobiDBLite consensus disorder prediction 43 85 - -
Cme08g02497 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 436 582 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cme08g02497 683 MobiDBLite consensus disorder prediction 1 20 - -
Cme08g02497 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 86 277 IPR029021 -
Cme08g02497 683 PANTHER MRNA-CAPPING ENZYME 3 683 - -
Cme08g02497 683 Pfam mRNA capping enzyme, catalytic domain 354 552 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cme08g02497 683 SUPERFAMILY Nucleic acid-binding proteins 555 668 IPR012340 -
Cme08g02497 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 183 253 IPR000387 GO:0016311|GO:0016791
Cme08g02497 683 MobiDBLite consensus disorder prediction 278 306 - -
Cme08g02497 683 SMART dsp_5 18 261 IPR020422 GO:0006470|GO:0008138
Cme08g02497 683 Pfam mRNA capping enzyme, C-terminal domain 557 651 IPR013846 -
Cme08g02497 683 Gene3D Protein tyrosine phosphatase superfamily 82 295 IPR029021 -
Cme08g02497 683 Pfam Dual specificity phosphatase, catalytic domain 138 259 IPR000340 GO:0008138|GO:0016311
Cme08g02497 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 314 553 - -
Cme08g02497 683 Gene3D - 551 660 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02497 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] - csv:101209960 1360.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme01g00724 . 76 385 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 1.6e-120 429.5
Cme01g00723 . 76 318 Protein tyrosine phosphatase (PTP) family AT1G71860 62.0 5.8e-86 314.7
Cme11g01934 . 32 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-39 159.8
Cme05g00319 . 1 124 Protein tyrosine phosphatase (PTP) family AT2G04550 56.8 3.7e-39 158.3
Cme10g00122 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 7.2e-114 407.1
Cme10g01211 . 39 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.7 1.8e-109 392.5
Cme04g01886 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.3e-204 707.2
Cme11g01505 . 2 192 Protein tyrosine phosphatase (PTP) family AT2G32960 54.2 3.4e-62 235.3
Cme02g00915 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 3.4e-54 208.8
Cme05g02021 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.8e-79 293.1
Cme11g01505 . 51 192 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.3e-64 243.0
Cme02g00915 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.0e-57 219.2
Cme02g00915 . 3 200 Protein tyrosine phosphatase (PTP) family AT3G02800 68.0 3.2e-79 291.6
Cme11g01505 . 44 190 Protein tyrosine phosphatase (PTP) family AT3G02800 62.8 2.1e-51 199.1
Cme10g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 6.1e-62 236.1
Cme04g02013 . 1 414 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.3e-156 549.7
Cme01g00074 . 11 612 Protein tyrosine phosphatase (PTP) family AT3G19420 64.4 2.9e-221 765.0
Cme08g00594 . 31 563 Protein tyrosine phosphatase (PTP) family AT3G19420 56.2 1.3e-165 580.1
Cme01g00074 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 1.2e-182 636.7
Cme08g00594 . 33 563 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 7.6e-164 574.3
Cme02g01069 . 2 1194 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 1.5e-288 989.6
Cme07g00118 . 1 516 Protein tyrosine phosphatase (PTP) family AT5G58160 54.3 2.7e-160 563.5
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1171.0
Cme03g01177 . 1 859 Protein tyrosine phosphatase (PTP) family AT5G04540 65.3 0.0e+00 1106.3
Cme11g01896 . 17 216 Protein tyrosine phosphatase (PTP) family AT3G44620 51.5 1.2e-54 210.3
Cme06g02484 . 27 320 Protein tyrosine phosphatase (PTP) family AT2G35320 64.3 3.3e-112 401.7
Cme08g02497 . 1 674 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 2.3e-275 944.9
Cme08g02497 . 5 674 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 2.9e-251 864.8
Cme08g02497 . 86 674 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 1.2e-182 636.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33