Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02562 ATGATACCAACGATAATGTCAAAATGGATGAGTTTAGTGAGCATTGTGTTGTTGGTGGGAGTCAGTTTAAGGTTTAGAAGTGTAAATGGGTTAAGTATGGGATATTACTTGATGAGTTGTCCCTTTGTTGATCCTATTGTCAAGAATACTGTCAACAGAGCTCTTCAAAATGATCCTACTTTAGCTGCTTCTCTTATTCGAATGCATTTTCATGATTGTTTCGTTGAGGGATGCGATGGATCAATATTAATTGATTCGACAAGAGACAATACAGCAGAAAAGGACTCTCCTGCTAACCTTAGCTTACGAGGCTATGAGGTTATTGATGAGATTAAGGAGCAACTTGAACGCCAATGTCCCGGGGGTCCATTTTATGAGATACCGAAAGGAAGGAAGGACGGAACTAGATCAAGAATCGAAGACACTGTTAATTTACCTTCTCCTTTCTTAAATGCTTCTCAGCTTATCAACACTTTTGCTCAACGTGGCTTTACTCCTCAACAAATGGTTGCACTTTCCGGAGCACATACATTGGGAGTGGCAAGATGCATATCATTCAAAGGGAGACTTGACGGCAACGACCCTCTTCTAAGTCCAAACTTCGGAAGAGCATTGTCAAGAACATGCAGCAATGGCGATAATGCGCTACAAACATTCGATGCCACGCCCGATAGCTTCGACAATGTCTATTACAATGCACTGTCGAGAGGCGCTGGAGTTTTGTTTTCAGACCAGACATTGTTTGCTAGCCCTCGCACGAGAGACATTGTGACAGCCTACGCCATGAACCAAGCCCTGTTCTTCTTGGACTTTCAACGAGCCATCACAAAAATGGGGTTACTTGATGTGAAGGAAGGTTATAGAGGCCAAGTTCGTCGCAACTGCCGTAGAGTTAATTAA 900 42.78 MIPTIMSKWMSLVSIVLLVGVSLRFRSVNGLSMGYYLMSCPFVDPIVKNTVNRALQNDPTLAASLIRMHFHDCFVEGCDGSILIDSTRDNTAEKDSPANLSLRGYEVIDEIKEQLERQCPGGPFYEIPKGRKDGTRSRIEDTVNLPSPFLNASQLINTFAQRGFTPQQMVALSGAHTLGVARCISFKGRLDGNDPLLSPNFGRALSRTCSNGDNALQTFDATPDSFDNVYYNALSRGAGVLFSDQTLFASPRTRDIVTAYAMNQALFFLDFQRAITKMGLLDVKEGYRGQVRRNCRRVN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32919372 32922484 + MELO3C003275.2.1 Cme08g02562 336825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02562 299 CDD secretory_peroxidase 30 298 IPR033905 GO:0004601|GO:0042744
Cme08g02562 299 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601
Cme08g02562 299 PANTHER PEROXIDASE 25-RELATED 19 297 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 Gene3D Peroxidase, domain 2 146 278 - -
Cme08g02562 299 ProSiteProfiles Plant heme peroxidase family profile. 30 299 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 Gene3D - 31 122 - -
Cme08g02562 299 PRINTS Haem peroxidase superfamily signature 219 234 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Haem peroxidase superfamily signature 121 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Haem peroxidase superfamily signature 168 183 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 SUPERFAMILY Heme-dependent peroxidases 30 299 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 Pfam Peroxidase 47 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PANTHER PEROXIDASE 47 19 297 - -
Cme08g02562 299 PRINTS Plant peroxidase signature 273 286 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Plant peroxidase signature 233 250 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme08g02562 299 PRINTS Plant peroxidase signature 217 232 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02562 Cme-Chr8:32919372 Cme06g00951 Cme-Chr6:6760364 3.44E-81 dispersed
Cme08g02562 Cme-Chr8:32919372 Cme12g01717 Cme-Chr12:23962345 6.99E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02562 K00430 - csv:101202852 564.303