Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme08g02585 AGAAAACATCTGACACCAACACAACACAACACAACCTTCCCCAACTTCCCTAATTATTATTCTCTGATTTCCCCCCTGTTAATTTGGATACCCTATTCCAATCAAAAACACAAAAACATGGCTTCCCAAACAGAGCCTTGGCTGATGGAAAATGGAACCCTCAAGCGCCTAACCAAAGAGCATCGACACGGCCATGGTCGAACAGCTCATAACATGTCGTCCTCTTCCTTACGCAAAAAGTCCGATTTAACCCTCGTCTCCAAAATCCAATTCGGCTGTCTCCGTAAGTTTTGTATTAATCTTCAGGAGGTCATTTTGGGAACTAAACTTTCCATTCTCTTCCCCGCGATTCCGTTCGCTATTGTCGCTCACAGTTTTGGCTTTGGAAGACCTTGGATTTTTGCATTGAGTTTGCTTGGCCTTACGCCATTGGCTGAACGTGTCAGCTTCTTGACCGAGCAAATCGCTTATTTCACCGGTCCAACAGTTGGGGGGCTTTTGAATGCAACATGTGGAAATGCAACGGAGCTGATAATTGCAATATTAGCACTGACACAAAGAAAGATAGATGTGGTGAAGTATTCCCTATTGGGTTCTGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACTTCTCTCTTTTGTGGTGGAATTGCTAATCTCAGACGGGAACAAATTTATGACAGAAGGCAAGCTGATGTCAACTCCCTCATGTTGATGCTATCTTTACTGTGCCACTTATTGCCGTTACTGTTTGGCTACGCTGCCTCCTCCGCCTCCACGGCCGCCGCCTCGACCCTCCATCTGTCCAGAGCTAGCAGCATTGTGATGCTCTCTGCTTACATTGCTTACTTGGTCTTTCAACTCTGGACTCATCGACAACTATTTGAAGCTGAGGAAGGTGAAGACGATGACGTTCCAGGAGAAGAGGCAGTGATCGGATTCTGGAGTGCATTTGCATGGCTTGTTGGAATGACACTCCTTATTGCTTTGCTTTCCGAGTACGTTGTCAACACAATTGAGGAAGCATCTACTACTTGGGGTTTGTCCGTGAGTTTCCTTAGCATAATCTTGCTCCCTATTGTTGGAAACGCCGCCGAACACGCCGGAGCTATCATATTTGCCTTCAAGAATAAGTTGGACATATCTTTGGGGGTTGCCCTGGGATCTGCAACACAAATTGCACTATTTGTGATTCCATTGTGTGTGATAGTAGCTTGGACAATGGGAGTGGACATGGACCTAAATTTCAACATAATGGAAACAGGGTCACTTGGACTAGCAATTATTGCCACAGCCTTCACTTTACAAGATGGAACCTCTCATTATATTAAAGGCCTAGTTCTTCTTCTTTGCTACATTATCATTGCTGCTTGCTTCTTTGTTTCCAAGACACAAGAAGATAATAACAATGCTCCCAACTTGGGACTCCAATCTTCAAACCAAGCAATCTTCAGAGCTTAA 1461 44.42 RKHLTPTQHNTTFPNFPNYYSLISPLLIWIPYSNQKHKNMASQTEPWLMENGTLKRLTKEHRHGHGRTAHNMSSSSLRKKSDLTLVSKIQFGCLRKFCINLQEVILGTKLSILFPAIPFAIVAHSFGFGRPWIFALSLLGLTPLAERVSFLTEQIAYFTGPTVGGLLNATCGNATELIIAILALTQRKIDVVKYSLLGSVLSNLLLVLGTSLFCGGIANLRREQIYDRRQADVNSLMLMLSLLCHLLPLLFGYAASSASTAAASTLHLSRASSIVMLSAYIAYLVFQLWTHRQLFEAEEGEDDDVPGEEAVIGFWSAFAWLVGMTLLIALLSEYVVNTIEEASTTWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIALFVIPLCVIVAWTMGVDMDLNFNIMETGSLGLAIIATAFTLQDGTSHYIKGLVLLLCYIIIAACFFVSKTQEDNNNAPNLGLQSSNQAIFRA 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33283309 33287820 + MELO3C003294.2.1 Cme08g02585 336848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme08g02585 486 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 43 473 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cme08g02585 486 Pfam Sodium/calcium exchanger protein 317 458 IPR004837 GO:0016021|GO:0055085
Cme08g02585 486 Pfam Sodium/calcium exchanger protein 132 289 IPR004837 GO:0016021|GO:0055085
Cme08g02585 486 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 43 473 - -
Cme08g02585 486 TIGRFAM caca2: calcium/proton exchanger 97 460 - -
Cme08g02585 486 Gene3D - 161 311 IPR044880 -
Cme08g02585 486 Gene3D - 312 461 IPR044880 -
Cme08g02585 486 TIGRFAM cax: calcium/proton exchanger 115 460 IPR004798 GO:0006816|GO:0015369
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme04g02718 Cme08g02585 CCT
Cme04g02718 Cme08g02585 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02585 Cme-Chr8:33283309 Cme12g00092 Cme-Chr12:924964 4.88E-155 dispersed
Cme08g02585 Cme-Chr8:33283309 Cme04g02718 Cme-Chr4:32580817 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme08g02585 K07300 - csv:101213857 803.897