Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g00012 | ATGCAATCCACAACTGGTGCTGCTGCCACTGCTACTGCTAGTAGTCGTACCTCCGGTGGCGGCCCCGGCCTTGCTCGCTTCCGCTCTGCTCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAAGAGGACCCTCTCAAGCCCAATCCCTGCTTGACTCAGCTTCTTGCCGCCAACTCCTCCGACCTCGTCTCAGCTCCCGGGGATCACCCCTTGTTCGACCCCAATCCCTCTCCCGCCTTCCACAGGCAGAATAGCTCCCCACCTGAGTTTCTTGCTCCCTCTGGAATTGCTGAAGGATTTTACACCTCCTATCCTCTCAATTCCTCCCCCACTCTCGACATCTCTCCCACCTCCAAGCCAGCTACAGATGTCGACGCCCAAAACTTCTTCCCCAAATTTTCCCCTCAACTGAAAAGAGAAGGAAGTGGAGTTTCCAGTTTGATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTGAGAGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAAGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGTATTCAACTGA | 693 | 52.67 | MQSTTGAAATATASSRTSGGGPGLARFRSAPAAWLEALLEDDEEDPLKPNPCLTQLLAANSSDLVSAPGDHPLFDPNPSPAFHRQNSSPPEFLAPSGIAEGFYTSYPLNSSPTLDISPTSKPATDVDAQNFFPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQVFN | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 86578 | 90827 | + | MELO3C022222.2.1 | Cme09g00012 | 336872 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g00012 | 230 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Cme09g00012 | 230 | Gene3D | - | 173 | 230 | IPR036638 | GO:0046983 | |
| Cme09g00012 | 230 | CDD | bHLH_AtbHLH_like | 177 | 228 | IPR045239 | - | |
| Cme09g00012 | 230 | PANTHER | TRANSCRIPTION FACTOR BHLH80 | 18 | 229 | - | - | |
| Cme09g00012 | 230 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 222 | IPR011598 | GO:0046983 | |
| Cme09g00012 | 230 | SMART | finulus | 178 | 228 | IPR011598 | GO:0046983 | |
| Cme09g00012 | 230 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Cme09g00012 | 230 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 228 | IPR036638 | GO:0046983 | |
| Cme09g00012 | 230 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 18 | 229 | - | - | |
| Cme09g00012 | 230 | Pfam | Helix-loop-helix DNA-binding domain | 177 | 223 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme07g01839 | Cme-Chr7:23863126 | Cme09g00012 | Cme-Chr9:86578 | 1.55E-32 | dispersed | |
| Cme09g00012 | Cme-Chr9:86578 | Cme02g01076 | Cme-Chr2:15788112 | 4.85E-19 | dispersed | |
| Cme09g00012 | Cme-Chr9:86578 | Cme02g00522 | Cme-Chr2:5414503 | 4.66E-36 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 41897 | PF00010 | HLH | 2.70E-10 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g00012 | - | - | csv:101209773 | 395.971 |