Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00032 ATGGCTCGTGGGAAAGTTCAAATGAAAAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGCAAGCGTCGAGCTGGGCTCCTCAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGACTCTTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAGCACACCAATGGGAATCAGCCACCAGACCCACCAATTCATCACCAAACTTCGGAAGCAAAAGAGGAGATCATCAGGCTGAAACAAGAAATTGAAGTCCTAAAGGGTCTCAGGTTAAATACATAA 339 44.84 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIHHQTSEAKEEIIRLKQEIEVLKGLRLNT 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 268946 271029 - MELO3C022205.2.1 Cme09g00032 336892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00032 112 Gene3D - 15 78 IPR036879 GO:0003677|GO:0046983
Cme09g00032 112 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 109 - -
Cme09g00032 112 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cme09g00032 112 Coils Coil 88 108 - -
Cme09g00032 112 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cme09g00032 112 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Cme09g00032 112 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00032 - - - cmo:103498765 221.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00032 Cme-Chr9:268946 Cme03g01461 Cme-Chr3:23893794 7.40E-32 dispersed
Cme09g00032 Cme-Chr9:268946 Cme06g00227 Cme-Chr6:1373704 1.25E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1659 . . . . . . . . . . . . . . . Cpe06g01008 . . . . . . . . Cla08g00049 Cam08g0049 Cec08g0201 Cco08g0104 Clacu08g0065 Cmu08g0062 Cre08g0053 . . . . . . . Cme09g00032 . . . . . . . . . . Cmo09g01305 . . . Car09g01147 . . Bhi06g00226 . . . . . . . . . . . . . Lsi08g00040 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012555 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 2 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41900 PF00319 SRF-TF 1.00E-22 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00032 Cme_Chr09 FPKM 0.124521 0.229995 3.975662 4.052244 35.778248 34.41383 36.254406 0.543372 0.421399 0.379497