Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00039 ATGAACATGAGGACACCAACCGAGCCCTTGATTTTGGCTTCAATGATTTTGACAATTTGTTTGTGTATGAGTACTACTCCAAAGGCTTGTTCTTCACAGGGGGATCCACCCGGTAGTGGATCAGTTCCTGGTTTCTTCATATTTGGAGATTCTTTAGTTGATAATGGGAATAACAATGGGTTGCTTACGCTTGCCAGAGCCAATTATAGGCCTTATGGTGTTGATTTTCCTCAGGGTACCACTGGCCGCTTCACTAATGGTCGAACTTTTGTTGATGTCTTAGCTCAACTACTGGGGTTTAGGACATTTATTCCTCCATACAGTAGAACTCGAGGAAGAGCCCTTCTAAGAGGAGCCAACTTTGCATCTGGTGCAGCTGGAATTAGAGATGAGACTGGAAACAATTTGGGTGCTCATTTATCAATGAACAACCAAGTGGAGAATTTTGGGAGGGCAGTGGAAGAAATGAGTAGGTTTTTCAGAGGAGACACTGAAGCATTGAGTTGCTATTTAAGCAAATGCATTTTCTATTCAGGAATGGGAAGTAATGACTATCTCAACAATTACTTCATGACTGATTTTTACAATACCAAATCTCAATTCACCCCTCAAGCTTATGCCTCTTCCCTTCTTCAAGATTATGATCGCCAACTTAGGCAATTGTATCAACTTGGAGCTCGAAAAGTAGTTGTGACCGGGGTGGGGCAGATTGGTTGTATTCCTTACGAGCTTGCTAGATATCAAGGTAATAGTAGTCGTTGCAACGAAGAGATCAATGGTGCGATTGCCCTTTTCAACTCGGGCCTCCGCAAGCTTGTTGATCGTTTCAACAGTGGTCGTGTTCTTCCTGGTGCTAAGTTTGTGTACCTTGATACCTACAAGAGCAACATCGACTTGATTGAAAATGCCTCCAATTATGGGTTTACAGTGGTAGACAAGGGATGTTGTGGAGTAGGAAGAAACAATGGACAAATAACATGTTTACCACTTCAGCAACCATGCCAAGATCGAAGAGGCTATTTGTTTTGGGATGCATTTCATCCAACTGAGGATGCAAATATTGTGTTGGCTAAGATGGCATTCACATCCCCTTCAAGAGCCTATGCATATCCCATCAACATTCAACAATTAGCAATGTTGTAA 1143 42.26 MNMRTPTEPLILASMILTICLCMSTTPKACSSQGDPPGSGSVPGFFIFGDSLVDNGNNNGLLTLARANYRPYGVDFPQGTTGRFTNGRTFVDVLAQLLGFRTFIPPYSRTRGRALLRGANFASGAAGIRDETGNNLGAHLSMNNQVENFGRAVEEMSRFFRGDTEALSCYLSKCIFYSGMGSNDYLNNYFMTDFYNTKSQFTPQAYASSLLQDYDRQLRQLYQLGARKVVVTGVGQIGCIPYELARYQGNSSRCNEEINGAIALFNSGLRKLVDRFNSGRVLPGAKFVYLDTYKSNIDLIENASNYGFTVVDKGCCGVGRNNGQITCLPLQQPCQDRRGYLFWDAFHPTEDANIVLAKMAFTSPSRAYAYPINIQQLAML 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 307379 309815 + MELO3C022200.2.1 Cme09g00039 336899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00039 380 PANTHER OS12G0274200 PROTEIN 18 380 - -
Cme09g00039 380 Pfam GDSL-like Lipase/Acylhydrolase 46 358 IPR001087 GO:0016788
Cme09g00039 380 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 18 380 - -
Cme09g00039 380 Gene3D SGNH hydrolase 38 365 IPR036514 -
Cme09g00039 380 SUPERFAMILY SGNH hydrolase 44 360 - -
Cme09g00039 380 CDD SGNH_plant_lipase_like 43 364 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00039 - - - csv:101209198 749.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02182 Cme-Chr6:27827704 Cme09g00039 Cme-Chr9:307379 1.64E-74 dispersed
Cme08g00189 Cme-Chr8:1300820 Cme09g00039 Cme-Chr9:307379 6.36E-130 dispersed
Cme09g00039 Cme-Chr9:307379 Cme12g01250 Cme-Chr12:20635951 8.55E-135 dispersed
Cme09g00036 Cme-Chr9:299035 Cme09g00039 Cme-Chr9:307379 3.45E-110 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012385 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00039 Cme_Chr09 FPKM 6.266667 0.0 12.887067 9.404531 4.383092 3.85311 2.168762 8.292902 8.573168 7.432367