Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00060 ATGAGGAGTCATGGCGCAGCCACGTCCAGCTACCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGTGAACCAGGAAAGAAGACGAGAATATGGTTGGGGAGCTTTGAGACCCCGGAGATGGCGGCGACGGCCTATGACGTAGCCGCCTACCATTTTCGTGGTCGTGATGCTCGTCTCAACTTCCCACATCTTGTCAACTCTCTCCCTTTCCCTCTTAGCTCCACTCCTGATGACATTCGTCTGGCTGCCCATGAGGCAGCTTTACGGGTACGAACAACGCCTGCTGTTGCATCGTCTGAGCTGGGTGACGAAACTTCCACCTTGGGGCTTGCGCCAGTGACTGTCCGATTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCGACCTTGGATTCGCCTAACATGTGGATGCAAATGTCGTCGGAGAGTATGCTAATGGATCAAGAGTTTTCAAATGGTAATGTGTTTGTTGATGACATGCAGGATGATGAGATGTGGGAGAATATGCATAATGATTCACTTTGGGATCCTTAG 549 51.55 MRSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPAVASSELGDETSTLGLAPVTVRLSPSQIQAINESTLDSPNMWMQMSSESMLMDQEFSNGNVFVDDMQDDEMWENMHNDSLWDP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 430858 432073 + MELO3C022181.2.1 Cme09g00060 336920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00060 182 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Cme09g00060 182 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Cme09g00060 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 3 181 - -
Cme09g00060 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 181 - -
Cme09g00060 182 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cme09g00060 182 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Cme09g00060 182 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Cme09g00060 182 CDD AP2 9 69 IPR001471 GO:0003700|GO:0006355
Cme09g00060 182 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Cme09g00060 182 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00060 Cme-Chr9:430858 Cme03g01743 Cme-Chr3:25983034 1.65E-28 dispersed
Cme09g00060 Cme-Chr9:430858 Cme09g00063 Cme-Chr9:486047 5.21E-53 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41901 PF00847 AP2 6.00E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00060 - - csv:101207243 352.829