Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme09g00060 | ATGAGGAGTCATGGCGCAGCCACGTCCAGCTACCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGTGAACCAGGAAAGAAGACGAGAATATGGTTGGGGAGCTTTGAGACCCCGGAGATGGCGGCGACGGCCTATGACGTAGCCGCCTACCATTTTCGTGGTCGTGATGCTCGTCTCAACTTCCCACATCTTGTCAACTCTCTCCCTTTCCCTCTTAGCTCCACTCCTGATGACATTCGTCTGGCTGCCCATGAGGCAGCTTTACGGGTACGAACAACGCCTGCTGTTGCATCGTCTGAGCTGGGTGACGAAACTTCCACCTTGGGGCTTGCGCCAGTGACTGTCCGATTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCGACCTTGGATTCGCCTAACATGTGGATGCAAATGTCGTCGGAGAGTATGCTAATGGATCAAGAGTTTTCAAATGGTAATGTGTTTGTTGATGACATGCAGGATGATGAGATGTGGGAGAATATGCATAATGATTCACTTTGGGATCCTTAG | 549 | 51.55 | MRSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAATAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRLAAHEAALRVRTTPAVASSELGDETSTLGLAPVTVRLSPSQIQAINESTLDSPNMWMQMSSESMLMDQEFSNGNVFVDDMQDDEMWENMHNDSLWDP | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 430858 | 432073 | + | MELO3C022181.2.1 | Cme09g00060 | 336920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme09g00060 | 182 | Pfam | AP2 domain | 10 | 59 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | Gene3D | AP2/ERF domain | 10 | 69 | IPR036955 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 | 3 | 181 | - | - | |
Cme09g00060 | 182 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 3 | 181 | - | - | |
Cme09g00060 | 182 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677 | |
Cme09g00060 | 182 | SMART | rav1_2 | 10 | 73 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | ProSiteProfiles | AP2/ERF domain profile. | 10 | 67 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | CDD | AP2 | 9 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | PRINTS | Ethylene responsive element binding protein signature | 33 | 49 | IPR001471 | GO:0003700|GO:0006355 | |
Cme09g00060 | 182 | PRINTS | Ethylene responsive element binding protein signature | 11 | 22 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00060 | Cme-Chr9:430858 | Cme03g01743 | Cme-Chr3:25983034 | 1.65E-28 | dispersed | |
Cme09g00060 | Cme-Chr9:430858 | Cme09g00063 | Cme-Chr9:486047 | 5.21E-53 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
41901 | PF00847 | AP2 | 6.00E-13 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme09g00060 | - | - | csv:101207243 | 352.829 |