Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00063 ATGGACCCCAATTACAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTTTCCGAAATCCGTGAACCGGGTAAAAAAACCAGGATTTGGCTCGGTAGTTACCATCTCCCCGAGATGGCTGCCGCCGCTTACGACGTCGCCGCCCTCCACCTCCGAGGCCCCGACGCCCGCCTCAACTTCCCTGACCTCGCTGACTCATTCCCCCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGCTTCGCTAACACCTGCAAACCCCCCGAACCCCCTGCGCCGGTTCGGGTGGGGCTGTCCCCTAGTCAGATTCAGGCGATCAATGAGTCGCCGTTGGATTCTCCGACGATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCGTGAATGGGATGATGAATATAACTATAATAACAACAACATGCAACTTCATCATCATTCTATTTGGGATTATTAA 486 56.17 MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPDLADSFPRPASSSPDHIQAAAHMAALRFANTCKPPEPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPREWDDEYNYNNNNMQLHHHSIWDY 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 486047 486532 + MELO3C022179.2.1 Cme09g00063 336923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00063 161 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Cme09g00063 161 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700|GO:0006355
Cme09g00063 161 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Cme09g00063 161 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700|GO:0006355
Cme09g00063 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 160 - -
Cme09g00063 161 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677
Cme09g00063 161 Pfam AP2 domain 3 53 IPR001471 GO:0003700|GO:0006355
Cme09g00063 161 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF022 4 160 - -
Cme09g00063 161 CDD AP2 3 63 IPR001471 GO:0003700|GO:0006355
Cme09g00063 161 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00063 Cme-Chr9:486047 Cme05g01995 Cme-Chr5:28458946 2.43E-35 dispersed
Cme09g00124 Cme-Chr9:938958 Cme09g00063 Cme-Chr9:486047 3.57E-29 dispersed
Cme09g00060 Cme-Chr9:430858 Cme09g00063 Cme-Chr9:486047 5.21E-53 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41902 PF00847 AP2 3.40E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00063 - - csv:101207003 284.263