Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00077 ATGGCGTTGAATATGAAAACCCTCACCCAAGCTTTGGCCAAAACCGCCGCGGTGATCGAGAAAACCGTTCATACCACCGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAACTTCTTGATCAGATCGGCTCCGCCGGTCCTGGCATGGCTTGGAAATTGTACTCTGCCAAGGCTCGTGATTCTTCTCGGCCTCAGCAATATCCAACTGTTTGCGTATGGGTTTTGGATAAGAGGGTTCTCTCCGAGGCTAGGACTCGCGCCGGGTTGTCGAAGTCTGTCGAGGATTCGTTTTTGGATCTGATTCGAGCCGATGCGGGGCGGTTGGTGAGGCTCCGGCATCCGGGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAATAAGAATGCCATGGCCATGGTTACCGAGCCGCTGTTTGCGTCGGTGGCAAATGTTATTGGGAATGTGGAGAATGTTGCTAAGGTTCCTAAGGAGCTTAATGGTTTGAGAAGAAATGAATATGTTGGATTAGTGGTTCTGGAGAGTCTCCAATGCAAGGGAAGCATCATTGGCCATAGCCCAAGATTAGTGGTTCTGAAAAGCTTTTCTGTTCTCATCGGCTTGTTCTTCATTGACATTTTACAGGAAATGGGACTACTGGAAATAAAACATGGTTTGCTTCAACTAGCGGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCACCGTGCTATATCTCCGGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTTGCTTTGCAATTCCAGCAGATCAGACTTCGGGTGACATGGCTACCATGCAGGCTTTCCACTATGCTGAATACGATGTTGAAGATTCTGTACTGCCTCTTCAGCCATCTCTGAACTACACTGCTCCTGAATTAGTTAGGAGTAAATCGTCTGTAGCTGGTTGTTCCTCGGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGATTGCTAGAAAGCCTTTGTTTGACTGCCACAATAATGTTAAAATGTACATGAATTCCTTAAATTACCTGTCAACTGAGTCATTTGCTTCAATTCCTCCGGAGTTAGTTCATGACTTGCAGAGAATGCTATCATCAAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACAGGTTCCCCGTTTTTCCGAGATGACACAAGACTGCGTGCTCTGCGTTTTCTTGACCACATGCTTGAAAGAGATAACATGCAAAAGTCTGAGTTCTTGAAAGCCCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTCTGTGCAGAATTACGGAATCTGGTTATGCAGCCCATGATACTCCCCATGGTACTCACAATAGCAGAGTCACAGATTATTTTTTGCTTTGCTTTTGGGTCTGAGGACAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCCGTCCTGAGTACTGCTGCTGGTGACACATTGTTGCTGCTTGTGAAGCATGCTGATCTTATAATTAACAAGACGAATCAAGAACAATTAATAACAAGTGTCCTGCCATTGATTGTTCGTGCTTATGATGATAACGATGCTCGCATACAAGAGGAAGTTCTGAGGAAATCAGTTTCCCTTGCTAAGCAACTTGACACACAGTTAGTGAAACAAGCAATTTTGCCTCGTGTTCATGGTTTAGCTCTAAAGACAACAGTTGCTGCGGTTAGAGTCAACGCTTTGCTGTGCTTTGGAGAATTGGTTCAAACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTGGACCGATCTGCTCCCACACTCATGTGTACCCTTGGGGTTGCAAACTCAATCCTTAAGCAGTATGGAATCGAATTTATTGCGGAGCACGTTCTTCCTTTACTCACACCTCTTCTTACAGCCCAACAATTAAACGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGACATTCTCAGGAAAATCGAAGAGAAAAGAGGAGTCACTGTTTCTGATTCTGGAATACCGGAGATGAAATCCACTACGGTTTCTAATGGCCAACTGTCCCAATCATCAACCAGAGCAAGTGATACTGTCGTTCCAACAATAAAAAGTCGACCTGCTTGGGATGAAGACTGGGGGCCTATTTCTAAGGGACATACACCCCCACAAAATTCTACTAGCAATATCTCATCTGCTCCTTCTGTTCATGGTGGTCAATCCATAACAGGAAATTCTGTACAAACAAATTCTGTTGTGACATCTCTGTCTAGTAATCAAACCGTTGCATCCTGCCTTCCAGTGAATGTTGAGTGGCCACCTCGAAACTCTACAGCGGGTGCACCCAGAATAAGTGATTCTGGGATGCAAGCAACTTCTGGAGCATCATCCACTTCAAACTTGGATGATGTGGACCCTTTCGCTGACTGGCCTCCACGCCCTAGTGGCTCCTTAGGAGGTGCTACCTTAGCTTCGAACAACGGGGCGATTGGGCCATCCATGAACAAATATGGAACTAGTTCATCCATGAGTACACCAAACAGTTTGAACTTTCAAACGAACAGCAATGCCAGTTGGACCGTCAACAACAAAAGTACTAATGAACCAATGAGACAAAATCATGGCTCTTCGACTTTGAACTCAAGCAGTCTGGCGACTGGGGGCCTCAGTTCCCAAAGTTCTATTGGATTCCAGAAGCAAAACCAGGGAATATCGTCTCAACATGCATACGATGCTGACAAAAAATTCACTGATCTTGGATCCATATTTGCACCTAGTAAGAACGAGAATAGCATAGCTGCACCTAGACTTGCCCCGCCTCCCTCAACTGCTGTCGGTAGAGGAAGAGGAAGAGGGAGAGGGGTTTCCTCAACACATCGTTCTACACAAAACAAATCATCATCTGGACAACCTCCCCTAATGGACTTACTGTAG 2964 45.07 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMAWKLYSAKARDSSRPQQYPTVCVWVLDKRVLSEARTRAGLSKSVEDSFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVIGNVENVAKVPKELNGLRRNEYVGLVVLESLQCKGSIIGHSPRLVVLKSFSVLIGLFFIDILQEMGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFCFAIPADQTSGDMATMQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSVAGCSSDIFSFGCLAYHLIARKPLFDCHNNVKMYMNSLNYLSTESFASIPPELVHDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSEFLKALSDMWKDFDSRILRYKVLPPLCAELRNLVMQPMILPMVLTIAESQIIFCFAFGSEDKHDFELSTLPSLVPVLSTAAGDTLLLLVKHADLIINKTNQEQLITSVLPLIVRAYDDNDARIQEEVLRKSVSLAKQLDTQLVKQAILPRVHGLALKTTVAAVRVNALLCFGELVQTLDKHAVLEILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGIEFIAEHVLPLLTPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVTVSDSGIPEMKSTTVSNGQLSQSSTRASDTVVPTIKSRPAWDEDWGPISKGHTPPQNSTSNISSAPSVHGGQSITGNSVQTNSVVTSLSSNQTVASCLPVNVEWPPRNSTAGAPRISDSGMQATSGASSTSNLDDVDPFADWPPRPSGSLGGATLASNNGAIGPSMNKYGTSSSMSTPNSLNFQTNSNASWTVNNKSTNEPMRQNHGSSTLNSSSLATGGLSSQSSIGFQKQNQGISSQHAYDADKKFTDLGSIFAPSKNENSIAAPRLAPPPSTAVGRGRGRGRGVSSTHRSTQNKSSSGQPPLMDLL 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 585657 596244 + MELO3C022164.2.1 Cme09g00077 336937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00077 987 MobiDBLite consensus disorder prediction 965 981 - -
Cme09g00077 987 SUPERFAMILY Protein kinase-like (PK-like) 34 394 IPR011009 -
Cme09g00077 987 MobiDBLite consensus disorder prediction 729 756 - -
Cme09g00077 987 CDD PK_SCY1_like 45 392 - -
Cme09g00077 987 Gene3D Transferase(Phosphotransferase) domain 1 207 393 - -
Cme09g00077 987 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 209 987 - -
Cme09g00077 987 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 164 - -
Cme09g00077 987 SUPERFAMILY ARM repeat 358 663 IPR016024 -
Cme09g00077 987 Gene3D - 394 677 IPR011989 -
Cme09g00077 987 ProSiteProfiles Protein kinase domain profile. 39 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00077 987 MobiDBLite consensus disorder prediction 937 987 - -
Cme09g00077 987 MobiDBLite consensus disorder prediction 790 813 - -
Cme09g00077 987 MobiDBLite consensus disorder prediction 684 710 - -
Cme09g00077 987 MobiDBLite consensus disorder prediction 682 756 - -
Cme09g00077 987 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cme09g00077 987 MobiDBLite consensus disorder prediction 829 918 - -
Cme09g00077 987 MobiDBLite consensus disorder prediction 780 918 - -
Cme09g00077 987 SMART serkin_6 39 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00077 987 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 209 987 - -
Cme09g00077 987 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 7 164 - -
Cme09g00077 987 Pfam Protein kinase domain 216 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00077 K17541 SCYL2; SCY1-like protein 2 - csv:101223115 1738.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00077 Cme-Chr9:585657 Cme09g01080 Cme-Chr9:15274368 5.34E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65134 PF00069 Pkinase 6.00E-19 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00077 Cme_Chr09 FPKM 10.070781 10.651614 8.5168 8.966487 15.336171 16.555553 15.581532 13.372333 13.34623 13.162831