Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00085 ATGTCAGGAGGGTCTAATTCATGCACCGTTTACGTTGGGAACTTGGACGAAAGGGTTAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGATAAGGATTCTGGTATACCCAAAGGTTTTGCTTTTGCAGTATATGAAAGTGAGGAGATTGCCAACTATGCTGTTAAGCTTTTCTCTGGCCTCGTGTCTCTTCATAGCCGTATCCTGAAGTTTGCAGTATCTGGGCAAGACAAGTCTTCACCTACTAATAGTGCAGTCACTTCATCATCAAATGTATCTCATAAATCAAGGTCGCATGGTTACTCTAATGAAATATCTCAGTATTCCAATCACCCGTCAACATCGTGCAGAACGTACCCTGAAAACCATGTACAAGGTGATTTAACTTTTCTTTATATTTGTCTTTGCATTGTTAATTTTCACTAG 459 41.18 MSGGSNSCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKDSGIPKGFAFAVYESEEIANYAVKLFSGLVSLHSRILKFAVSGQDKSSPTNSAVTSSSNVSHKSRSHGYSNEISQYSNHPSTSCRTYPENHVQGDLTFLYICLCIVNFH 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 632441 635273 + MELO3C022158.2.1 Cme09g00085 336945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00085 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 87 IPR000504 GO:0003723
Cme09g00085 152 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 91 - -
Cme09g00085 152 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 89 126 - -
Cme09g00085 152 MobiDBLite consensus disorder prediction 87 116 - -
Cme09g00085 152 PANTHER OS01G0876500 PROTEIN 1 91 - -
Cme09g00085 152 PANTHER OS01G0876500 PROTEIN 89 126 - -
Cme09g00085 152 SUPERFAMILY RNA-binding domain, RBD 5 79 IPR035979 GO:0003676
Cme09g00085 152 Gene3D - 3 97 IPR012677 -
Cme09g00085 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 71 IPR000504 GO:0003723
Cme09g00085 152 SMART rrm1_1 9 83 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00085 K12831 SF3B4, SAP49; splicing factor 3B subunit 4 - csv:101222164 185.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00085 Cme-Chr9:632441 Cme06g00868 Cme-Chr6:5944959 1.23E-07 dispersed
Cme09g00084 Cme-Chr9:626984 Cme09g00085 Cme-Chr9:632441 1.73E-70 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1709 Blo01g01680 Blo12g00814 . Bda03g00358 Bpe02g00261 . Bma04g00335 Bma01g02447 . . Cma01g00868 Cma09g01300 . . . Cpe06g00980 . . . . . . . . Cla08g00119 Cam08g0117 Cec08g0139 Cco08g0177 Clacu08g0128 Cmu08g0122 Cre08g0108 Cone4ag1156 . . . . . . Cme09g00085 . . . . . . . . . Cmo01g00911 . . . . Car09g01111 . Cpe02g00991 . . . . . . . . . . . . . . Lsi08g00104 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002883 1 6 2 2 1 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 3 3 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00085 Cme_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.732 0.0 0.0