Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00099 ATGCAGAGTTCATCATCGTCTTCTTTGGATCGTCCTAAGATGAACTACGACGTGTTCATAAGCTTTAGAGGTAGAGATGTTCGTCACACTTTTGCAGGATATTTGTATGATGCTTTGAATCGTTTGGGGATAAAAGCTTTCCTGGACAACAAGAGGTTTTTAATTGGAGATGATCTTCATGACTTATTCAAAATAATCGATGAATCAAGGTCAGCAATTGTTGTTCTTTCAGAAGACTATGCTTCTGCTAAATGGTGTTTGAGAGAGTTGACTAAGATAATGGATTCCATGGGAACCTCGATGGAGCGTGTTCTTCCTGTATTTTATCATATTGATCCATCAATTGTTAAAGATCAATCTGGAACTTTTAAGACAAGTTTTGATGAACATGAAGCCAATGCTTTAAAGGAAATTGATAATCAAGAGAAGGAAAAGCGCTTGAAGGAACTCCAGAATTGGAAAAATGCACTGAAGAAAATTGGCAATCACACTGGAGTTGTCATCACTAAGAACAGTTCTGAGGTAGATATAGTAAATAAAATTGCAAGTCAAATATTCGATGCATGGCGTCCTAAGTTGGAAGCATTGAATAAGAATTTAGTTGGAATGACATCCCGATTGCTCCATATGAATATGCATCTTGGTTTAGGATTAGACGATGTACGCTTTGTTGCGATAGTAGGAATGGGTGGTATTGGTAAAACAACTATTGCTCAAGTCGTTTTTGATTGCATTCTTTCAAAGTTTGACGATTGCTGCTTTCTAACGTTACCTGGAGGTGATTCAAAGCAAAGTTTAGTGTCATTACAACGGGAAATGCTTTCTCAAATTTTTCATAAAGAAGATTTTAAAATATGGCATGAGAATCATGGAGTAGAGATGATTAAAAATCGACTGAGTGGTAGAAAGGTTCTTATTGTTCTTGATGGTGCCGAAGAGAGAAGGCAGTTAGAAATGTTGGCTGGAAGCACTGAGTGGTTTGGTCCTGGAAGCAGAATCATCATTACAACTAGAAATAAAGGATTATTGTGCCATCCTAATTATGATGAAATGAAAGAATACAATGTTGAGGAACTAGATCATGATAGTGCCCTTCAACTCTTTTTGAAGCATGCATTTGGTAGTAATCATCAAAACAAGGACAGTTTCATGGATCTTAGTAACGAGATAGTTGAGAAAGCTAAAAGACTTCCATTAGCTTTAAGAGTGATTGGATCTTCTTTGTATGGTAAAGAGATTACAATATGGAGAGAAACGTTGAAAAGGCTGATCAAAGTGGATGAAAGAAATTTTTTTGATATATTGAAAATAAGTTATGATGGATTGGGAGTAGAAAGCCAACAAGTTTTTCTTGACATTACATGTTTCTTCAATGGAAAAAATGAAGATAGAGTAAATGAAATATTGGAGAGTTTTGGTTATAGTCCTAATAGTGAACTACAGTTATTGATGCAAAGATGTTTAATTGAAGTTTCACACAAGAAAATATTGGTGCATGATTTAATTCTTGAAATGGGTCGAGAAATTGTGCGTAAGGAGTCCCTCACTCAACCAGAAAAACAGAGTAGGATTTGGCTTCATGAAGATCTTTACTGCAGGTTTGCTGAAAAACATGACTTAATGCATATTCAAGGGATAGTTTTAAGTTTGGAAAAAGAAATGGAAGAATCAATAGAATTGGATGCCGAATCCTTTTCAGAGATGACCAAACTAAGAATACTGGAAATAAATAATGTGGAGCTCGATGAAGACATTGAATATCTCTCTCCACTTTTGCGGATAATTAATTGGCTTGGCTATCCTTCGAAGAGTTTGCCCCCAACGTTTCAATCGCGGTATTTGTTTGAACTACTCTTGCCTCATAGTCAACTTTTACGAGTTTGGGATGGAAAAAGGAGATTTCCGAAGCTGAAATTAATTGATGTTAGTAACTCAGAACACTTGAGGGTGACACCTGATTTTTCTGGGGTTCCAAATCTTGAGAGGTTGGTTCTATGTAACTGTGTTAGATTGTGTGAGATTCATCCCTCCATCAATTCCCTCAACAAACTCATTTTACTGGATTTAGAGGGTTGTGGTGATCTTAAACATTTTCCAGCAAATATAAGATGTAAAAATCTCCAAACACTCAAACTTTCTGGTACAGGTCTTGAAATTTTTCCAGAGATAGGACATATGGAACATTTGACTCATCTTCATCTTGATGGATCCAAGATAACCCATCTTCATCCTTCAATTGGGTATCTAACTGGCTTAGTTTTCTTGGACCTATCCACCTGTTTAGGCCTTTCTAGTCTTCCTTTTGAAATTGGTAACTTGAAGTCTTTGAAAACCCTCCTTTTGAAATATTGTAAAAGACTTGATAAAATCCCTCCAAGCTTAGCAAATGCTGAATCCTTGGAGACTCTTTCTATTAGTGAAACCTCAATAACCCATGTTCCATCAAGCATTATTCATTGTTTAAAGAACCTAGAAACGTTAGATTGTGAAGAACTATCACGTGGAATTTGGAAGTCATTGCTCCCCCAATTGAACATTAATCAAACAATAACTACTGGTTTGGGTTGTCTCAAAGCTCTAAATTTAATGGGTTGTAAACTTATGGATGAGGACATTCCTGAAGATCTCCATTGCTTTTCCTCATTAGAAACACTAGATCTCAGCTATAATAACTTCACAACACTCCCTGATAGTCTTAGCCACCTCAAGAAGTTAAAGACATTGATCCTGAATTATTGCACTGAGCTCAAAGACTTACCAAAGCTTCCAGAAAGTTTGCAATATGTAGGAGGAGTAGACTGCAGATCAATGTCAGAACAATATTATAACAAAATTTTGCTTATCCCTTCTAGTTCTGGACACCAACTTTACCTTACTTTTATCATTCCTTCCAAGGATGCGGATGTAGAATGTGTCATGAATGAGTTCCAACATTCGATATTTACTCGAAGATCGTTTGAGCAAAGTATTATAGAAAAGAAACCATCCCCTATCTTCCATGACACTGTTGACATGTTCCAGTGGTTTGGCCAGATAAATGAAGGGAATTGGACAAACATTCAGTATGAGCAAGAATTCTCAATCAGTAAACCACTCAATATTATGTATGAAGATGTTAATCTAAGCAATGTTTGTGGAGTTTTCCTTTCAACAAACATTGAATTTCCACAAAATTTAAATCATCTTGCAATTGGAAGATTCTTAGTTAGCTTTGAAATTGATGGGAAATGTTCTGGTGGAACAATGAATTATAAGATGTCCCAATTTAAAGCTGCAAGATTCTTTTGGGTAGCATACATACCAATTTGGATGAATAAAGATCATAGTTTGATGGTTCAAAGATGTTGCTCTGTGAAGGTTACAATTAGTTATTGTTGTGATCATATAGATGCAAGCAAGGTCAAAATTAAAGCATGTGGTGTTTCTTCTATGCTCTCCTGGCCAAATGTAGCAGAGTATTTGGCGAAATTGTTCACTGAGCGTTTTTGCTCTAAACGCAATTTCTACACCATGATTCGACAACATAATGATCATCAGACTGAATGCAGGTGTGATGAACTTGAAGTTGGAAAGGATGACTTTTCATCCTCAACATTTGAATCTAACGATTCAACATTTTTGCTAAGGAAGAACCTCAGAGCAATACTTGGGGTAATGTTCGAGGGAAAAAAGCGTTACTACATGAAATACTTCTTCCCACATACAAAAATTTTTGGATGGTTCAAAAATCAGAACAAGAAGGACAAAGTAGCAGTGAAGATTCCCGTAAATATAGAAAAAGACAGGAAGTGGATGGGGTTGGCAATGTTTGTTGTCTTCTCGATTTCTGAGAAAGCTTCTTGTTATTGCTTTGAGTATGAAATACAAACAAAGGAGAACATTATATCCACCCAAAGCCACTCTATCTCTACAGATCAGGTTTTAGAGCATTCAAATCAAATACTGTTTGTGGCGTTTGAACCGCGGTATAATTGGTATCCTTATGATGAACTGAAGTCTTCTTCATCCAACCATGTTTACATTAATTTCAATACTAACGGTGCAAGAATGCGAGTCGAGTTTTGTGGAGCTCGTTTAGTTTACCAGCAAAATGTTGAGGGACTTGTTCACACAATTCTGAATTGCATAGCGGAGAGTGGAGATGAGCTTTATGAACATTACAACCAATACATTGTGGAATCTCATTTAACATTTATTAATACACATTGGTATACTCTCTCATTCCGTCGAAATAACTCTGTGAAGAATCAACCATCAACTGCTGCTTCAACTTGTACGGCTTCAAGCCTTTCAGTTGAGCACCTTTTATATGGAAGTTTCCCACACCCATTCTTCCACAAGTCCTTACAGGAACGATTTAGAAGTAAGTTTGATCTGCTTCTACATGGAGATAAGATCCCAAAATTTTTCAGCAATCAAAGCGGAGGAAACATGACAGAAATAAAGTTACCACAATATTTGGAAGAATTTCGAGAGAGTGTAGGTCTTGCTGTGTGTGCTCTTGTGGTTGTGGACAAGAAAAGAAGAAAACTAAATGAGATTATGCCAGAACGAGAAAGGTATACAAAAGTTGTGGATCTTATATGCAAATTCAAAGTTGACTCGTATCAAATTATGCCAGAGCACTGTCACTTCACATCTCAACAAAAGCTCTTGAGTGAATATGCTTCACAATTCCTTTGGCTCTCTTACATTCCCCTTCATGGATTTAATATCAATTGGCATTATTGCACCCAGTTTGAAGTTGCACTTGAAACTAGCTGTGATGAGCTATTTGGAGTGAAAAATTGTGGTCTTCATCTCATACATAAACATGAAAGGACGATGATTGATAGGATGATAATGGAGTCGACTGTTCCATCATCCACTAGCCACAAAGGAAAGGAGCCTCAAATTCAATGA 4902 36.56 MQSSSSSSLDRPKMNYDVFISFRGRDVRHTFAGYLYDALNRLGIKAFLDNKRFLIGDDLHDLFKIIDESRSAIVVLSEDYASAKWCLRELTKIMDSMGTSMERVLPVFYHIDPSIVKDQSGTFKTSFDEHEANALKEIDNQEKEKRLKELQNWKNALKKIGNHTGVVITKNSSEVDIVNKIASQIFDAWRPKLEALNKNLVGMTSRLLHMNMHLGLGLDDVRFVAIVGMGGIGKTTIAQVVFDCILSKFDDCCFLTLPGGDSKQSLVSLQREMLSQIFHKEDFKIWHENHGVEMIKNRLSGRKVLIVLDGAEERRQLEMLAGSTEWFGPGSRIIITTRNKGLLCHPNYDEMKEYNVEELDHDSALQLFLKHAFGSNHQNKDSFMDLSNEIVEKAKRLPLALRVIGSSLYGKEITIWRETLKRLIKVDERNFFDILKISYDGLGVESQQVFLDITCFFNGKNEDRVNEILESFGYSPNSELQLLMQRCLIEVSHKKILVHDLILEMGREIVRKESLTQPEKQSRIWLHEDLYCRFAEKHDLMHIQGIVLSLEKEMEESIELDAESFSEMTKLRILEINNVELDEDIEYLSPLLRIINWLGYPSKSLPPTFQSRYLFELLLPHSQLLRVWDGKRRFPKLKLIDVSNSEHLRVTPDFSGVPNLERLVLCNCVRLCEIHPSINSLNKLILLDLEGCGDLKHFPANIRCKNLQTLKLSGTGLEIFPEIGHMEHLTHLHLDGSKITHLHPSIGYLTGLVFLDLSTCLGLSSLPFEIGNLKSLKTLLLKYCKRLDKIPPSLANAESLETLSISETSITHVPSSIIHCLKNLETLDCEELSRGIWKSLLPQLNINQTITTGLGCLKALNLMGCKLMDEDIPEDLHCFSSLETLDLSYNNFTTLPDSLSHLKKLKTLILNYCTELKDLPKLPESLQYVGGVDCRSMSEQYYNKILLIPSSSGHQLYLTFIIPSKDADVECVMNEFQHSIFTRRSFEQSIIEKKPSPIFHDTVDMFQWFGQINEGNWTNIQYEQEFSISKPLNIMYEDVNLSNVCGVFLSTNIEFPQNLNHLAIGRFLVSFEIDGKCSGGTMNYKMSQFKAARFFWVAYIPIWMNKDHSLMVQRCCSVKVTISYCCDHIDASKVKIKACGVSSMLSWPNVAEYLAKLFTERFCSKRNFYTMIRQHNDHQTECRCDELEVGKDDFSSSTFESNDSTFLLRKNLRAILGVMFEGKKRYYMKYFFPHTKIFGWFKNQNKKDKVAVKIPVNIEKDRKWMGLAMFVVFSISEKASCYCFEYEIQTKENIISTQSHSISTDQVLEHSNQILFVAFEPRYNWYPYDELKSSSSNHVYINFNTNGARMRVEFCGARLVYQQNVEGLVHTILNCIAESGDELYEHYNQYIVESHLTFINTHWYTLSFRRNNSVKNQPSTAASTCTASSLSVEHLLYGSFPHPFFHKSLQERFRSKFDLLLHGDKIPKFFSNQSGGNMTEIKLPQYLEEFRESVGLAVCALVVVDKKRRKLNEIMPERERYTKVVDLICKFKVDSYQIMPEHCHFTSQQKLLSEYASQFLWLSYIPLHGFNINWHYCTQFEVALETSCDELFGVKNCGLHLIHKHERTMIDRMIMESTVPSSTSHKGKEPQIQ 1633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 767040 775410 - MELO3C022144.2.1 Cme09g00099 336959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00099 1633 ProSiteProfiles TIR domain profile. 14 189 IPR000157 GO:0007165
Cme09g00099 1633 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 165 IPR035897 -
Cme09g00099 1633 ProSiteProfiles Leucine-rich repeat profile. 881 903 IPR001611 GO:0005515
Cme09g00099 1633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 453 IPR027417 -
Cme09g00099 1633 Gene3D - 358 443 IPR042197 -
Cme09g00099 1633 Gene3D Ribonuclease Inhibitor 546 702 IPR032675 -
Cme09g00099 1633 Gene3D Ribonuclease Inhibitor 703 941 IPR032675 -
Cme09g00099 1633 SMART LRR_typ_2 798 820 IPR003591 -
Cme09g00099 1633 SMART LRR_typ_2 726 749 IPR003591 -
Cme09g00099 1633 SMART LRR_typ_2 879 902 IPR003591 -
Cme09g00099 1633 SUPERFAMILY L domain-like 498 923 - -
Cme09g00099 1633 Gene3D - 10 188 IPR035897 -
Cme09g00099 1633 SMART till_3 15 163 IPR000157 GO:0007165
Cme09g00099 1633 Gene3D - 189 350 IPR027417 -
Cme09g00099 1633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 729 939 - -
Cme09g00099 1633 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 198 716 - -
Cme09g00099 1633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 198 716 IPR044974 GO:0006952
Cme09g00099 1633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 729 939 IPR044974 GO:0006952
Cme09g00099 1633 Pfam NB-ARC domain 220 421 IPR002182 GO:0043531
Cme09g00099 1633 PRINTS Disease resistance protein signature 223 238 - -
Cme09g00099 1633 PRINTS Disease resistance protein signature 298 312 - -
Cme09g00099 1633 PRINTS Disease resistance protein signature 394 408 - -
Cme09g00099 1633 PRINTS Disease resistance protein signature 679 695 - -
Cme09g00099 1633 Coils Coil 131 160 - -
Cme09g00099 1633 Pfam C-JID domain 1232 1366 IPR045344 -
Cme09g00099 1633 Pfam C-JID domain 1461 1606 IPR045344 -
Cme09g00099 1633 Pfam TIR domain 15 192 IPR000157 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00099 - - - csv:105435618 3155.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00087 Cme-Chr9:650089 Cme09g00099 Cme-Chr9:767040 3.83E-178 dispersed
Cme09g00097 Cme-Chr9:744523 Cme09g00099 Cme-Chr9:767040 0 dispersed
Cme09g00099 Cme-Chr9:767040 Cme09g00622 Cme-Chr9:6614448 0 dispersed
Cme09g00628 Cme-Chr9:6690986 Cme09g00099 Cme-Chr9:767040 3.36E-24 dispersed
Cme09g00098 Cme-Chr9:750669 Cme09g00099 Cme-Chr9:767040 3.71E-57 tandem
Cme09g00099 Cme-Chr9:767040 Cme09g00100 Cme-Chr9:779366 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00135 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002302 0 14 0 0 0 1 0 2 2 1 2 2 0 1 1 0 2 0 0 1 1 0 5 3 7 2 2 6 5 0 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00099 Cme_Chr09 FPKM 7.760473 7.932793 7.320386 6.751707 41.585186 40.251373 35.974953 9.433494 8.894026 7.733058