Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00107 ATGGATGCAATGGACTCGATCGAGGAGTTGGGAGAGCTGTCTGAATCCATGCGCCAAGCGGCGGCTTTACTTGCCGATGAAGATGTTGATGACAATTCTACTTCTGGTGCTTCTTCTCGTAGAGCTACGACTTTTCTCAACGTTGTGGCTTTAGGCAATGTTGTGAGTTTACTGAGTTGGAAGGCCGGCTTCATGACTGACCGTTGTAACGAAGTGTTAGTGCTTGTAGTGGGCGCTGGCAAATCTGCAGTTTTGAATAGTTTAATCGGGCATCCTGTTTTGCCAACGGGTGAAAATGGTGCTACACGAGCTCCAATAAGCATTGATCTACAGAGGGATGGTTCTTTGAGTAGCAAATCAATAATTCTGCAGATTGATAATAAATCTCAACAGGACAGGCTGAGCAAGGGTTCTTCAGGAAAGGGCCGAGATGAAATATATCTAAAGCTTCGTACGAGTACAGCGCCTCCACTGAAGTTGGTTGATTTACCTGGACTTGATCAACGGGCCATGGATGATTCTGTGGTTAGTGAATATGCCGAACACAATGATGCAATTTTACTAGTTATTGTACCAGCAGCCCAGGCTCCTGAAATCGCTTCATCTAGAGCCCTAAGATCCGCCAAGGAATTTGATAAAGATGGTACCAGAACCATTGGTGTAATTAGTAAAATCGATCAAGCTTCTTCAGACCAGAAGTCTCTTGCTGCAGTGCAAGCTCTCCTGTTAAATCAAGGGCCAGCACGAGCATCAGATATCCCATGGGTTGCTTTAATTGGTCAATCTGTTTCGATAGCTACTGCACAGTCTGGATCTGTTGGCTCTGAGAATTCCATGGAGACTGCTTGGAGAGCAGAGAGTGAAAGTCTAAAATCTATACTAACTGGTGCCCCTCAAAGTAAGCTGGGGAGGCTAGCCTTAGTTGATGCACTGTCCCAACAGATCCGGAAGCGAATGAAAGTCCGGCTTCCTAACCTTCTTTCCGGGTTACAAGGGAAGTCTCAAGTAGTTCAGGATGAGTTGGTTAGGCTTGGTGAACAAATGGTGAATGGTGTTGAGGGGACTAGGGCTCTAGCTTTGGAGCTTTGCCGTGAGTTTGAAGATAAGTTTCTCCAGCACATAGGCTCTGGTGAGTTCTACTACATGACAAGTTGGAAAATAGTTGCTAGCTTTGAGGGAAATTTTCCAAATCGAATCAAGCAGTTGCCTTTAGACAGACACTTCGATATTAATAATGTGAAGAGGATCGTATTAGAAGCTGATGGTTATCAGCCTTATCTTATATCACCGGAGAAAGGTTTGAGATCTTTAATAAAAGGCGTTTTGGAGCTTGCGAAAGAACCTTCACGTCTCTGTGTTGATGAGGTGCACAGAGTTTTGATAGATATTGTTTCTGCTGCTGCTAATGGCACCCCAGGTCTTGGAAGATACCCACCATTCAAAAGGGAGGTTGTGGCCATTGCAAGTGCTGCCCTGGATGGGTTTAAAAATGAAGCAAAAAAGATGGTTGTGGCGTTAGTTGACATGGAGCGAGCATTTGTCCCACCACAACACTTTATACGTCTTGTACAAAGAAGGATGGAAAGACAGCGCCGGGAAGAGGAAGTGAAAACTAGATCATCAAAAAAAGGACACGAGGCTGAACAAGCTGTGTCAAACAGGGCAAGTAGTCCTCAAACAAATAGTCAGCAAGCTGGTGGAAGCCTGAAATCAATGAAAGAAAAACCTAGTAAGGAAGAGAAGGAAGAGAAGGAAGGTTCGGGTTTGAAGACAGCAGGTGCTGAGGGAGAGATAACAGCTGGTTTCTTGTTAAAGAAAAGTGCAAAAACTAATGGGTGGAGCAGGCGATGGTTTGTTTTGAATGAGAAGACTGGAAAGCTTGGATACACCAAGAAGCAAGAAGAGAGACACTTTCGTGGTGTCATTACGTTAGAGGATTGTAACATTGAAGAAGTTGCAGATGAGGAAGAGCCTACACCTTCGAAGAGTTCAAAGGATAAAAAGGCTAATGGGCCAGATTCTGGAAAAGGATCAAGTCTTGTGTTTAAGATTACCAGCAAAGTTCCATATAAAACTGTTTTAAAAGCCCATAGTGCTGTTATTTTGAAAGCGGAAAGTGCTGCAGACAAGGTGGAATGGACAAACAAGATACGCAATGTCATTCAACCATCCAAAGGAGGACAGACAAGAGGAGCATCCTCCGAAGGTGGTCTTACCCTGCGGCAGAGTTTATCTGATGGTTCCCTAGATACTATGGCTCGAAAACCTGCTGATCCTGAAGAAGAGCTGCGGTGGATGTCTCAAGAAGTTCGTGGTTATGTTGAGGCAGTTTTGAATAGTTTGGCTGCAAATGTTCCCAAGGCGGTTGTGCTTTGTCAAGTCGAGAAGGCAAAGGAAGACATGCTTAATCAATTATATAGCTCGATCAGTGCCCAAAGCTCAGCCAAGATTGAGGAGCTTCTCCAGGAGGATCAGAATGTTAAACGAAGGAGAGAACGTTATCAAAAACAATCCTCTCTCCTTTCAAAACTTACTCGTCAGCTCAGCATTCATGATAATCGTGCAGCTGCTACTGGTTGGTCCGATAGTGGTTCAGAAAGTAGTCCCAAAACTAGCGGATCACCTGGAGATGAATGGAGATCTGCATTTGATGCTGCTGCTAATGGTCGGGCTGACTACAGAAGATCTTCTTCCAATGGCCACAGTGATGCCACACAAAACGGTGACATAAACTCAGGTTCAAACTCTAGCAGCCGTCGTACTCCAAACCGATTGCCACCAGCACCTCCGCAGTCTTCTTCTGGCTCCAGATACTTCTAG 2820 44.86 MDAMDSIEELGELSESMRQAAALLADEDVDDNSTSGASSRRATTFLNVVALGNVVSLLSWKAGFMTDRCNEVLVLVVGAGKSAVLNSLIGHPVLPTGENGATRAPISIDLQRDGSLSSKSIILQIDNKSQQDRLSKGSSGKGRDEIYLKLRTSTAPPLKLVDLPGLDQRAMDDSVVSEYAEHNDAILLVIVPAAQAPEIASSRALRSAKEFDKDGTRTIGVISKIDQASSDQKSLAAVQALLLNQGPARASDIPWVALIGQSVSIATAQSGSVGSENSMETAWRAESESLKSILTGAPQSKLGRLALVDALSQQIRKRMKVRLPNLLSGLQGKSQVVQDELVRLGEQMVNGVEGTRALALELCREFEDKFLQHIGSGEFYYMTSWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLIDIVSAAANGTPGLGRYPPFKREVVAIASAALDGFKNEAKKMVVALVDMERAFVPPQHFIRLVQRRMERQRREEEVKTRSSKKGHEAEQAVSNRASSPQTNSQQAGGSLKSMKEKPSKEEKEEKEGSGLKTAGAEGEITAGFLLKKSAKTNGWSRRWFVLNEKTGKLGYTKKQEERHFRGVITLEDCNIEEVADEEEPTPSKSSKDKKANGPDSGKGSSLVFKITSKVPYKTVLKAHSAVILKAESAADKVEWTNKIRNVIQPSKGGQTRGASSEGGLTLRQSLSDGSLDTMARKPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSSAKIEELLQEDQNVKRRRERYQKQSSLLSKLTRQLSIHDNRAAATGWSDSGSESSPKTSGSPGDEWRSAFDAAANGRADYRRSSSNGHSDATQNGDINSGSNSSSRRTPNRLPPAPPQSSSGSRYF 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 812640 823348 - MELO3C022135.2.1 Cme09g00107 336967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00107 939 Coils Coil 817 837 - -
Cme09g00107 939 ProSiteProfiles GED domain profile. 763 856 IPR020850 -
Cme09g00107 939 MobiDBLite consensus disorder prediction 525 592 - -
Cme09g00107 939 MobiDBLite consensus disorder prediction 550 570 - -
Cme09g00107 939 SMART GED_2 758 844 IPR003130 GO:0003924|GO:0005525
Cme09g00107 939 MobiDBLite consensus disorder prediction 649 678 - -
Cme09g00107 939 Pfam Dynamin central region 276 518 IPR000375 -
Cme09g00107 939 Pfam Dynamin GTPase effector domain 761 843 IPR003130 GO:0003924|GO:0005525
Cme09g00107 939 MobiDBLite consensus disorder prediction 572 590 - -
Cme09g00107 939 Gene3D - 73 340 IPR027417 -
Cme09g00107 939 MobiDBLite consensus disorder prediction 655 672 - -
Cme09g00107 939 ProSiteProfiles PH domain profile. 596 722 IPR001849 -
Cme09g00107 939 MobiDBLite consensus disorder prediction 525 549 - -
Cme09g00107 939 Gene3D - 587 725 IPR011993 -
Cme09g00107 939 PANTHER DYNAMIN-2A 5 873 - -
Cme09g00107 939 PANTHER DYNAMIN 5 873 IPR022812 -
Cme09g00107 939 Pfam PH domain 601 721 IPR001849 -
Cme09g00107 939 MobiDBLite consensus disorder prediction 722 742 - -
Cme09g00107 939 MobiDBLite consensus disorder prediction 855 875 - -
Cme09g00107 939 MobiDBLite consensus disorder prediction 855 939 - -
Cme09g00107 939 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 94 103 IPR019762 -
Cme09g00107 939 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 65 324 IPR030381 GO:0005525
Cme09g00107 939 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 333 IPR027417 -
Cme09g00107 939 Gene3D Dynamin, middle domain 353 563 - -
Cme09g00107 939 Pfam Dynamin family 78 224 IPR045063 -
Cme09g00107 939 SMART PH_update 597 724 IPR001849 -
Cme09g00107 939 MobiDBLite consensus disorder prediction 892 922 - -
Cme09g00107 939 SMART dynamin_3 48 266 IPR001401 GO:0003924|GO:0005525
Cme09g00107 939 SUPERFAMILY PH domain-like 598 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00107 K01528 DNM1_3; dynamin 1/3 [EC:3.6.5.5] - csv:101220753 1630.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00029 Cme-Chr3:551541 Cme09g00107 Cme-Chr9:812640 0 dispersed
Cme09g00107 Cme-Chr9:812640 Cme09g01318 Cme-Chr9:18263033 1.64E-07 dispersed
Cme09g00931 Cme-Chr9:12991244 Cme09g00107 Cme-Chr9:812640 2.36E-11 dispersed
Cme09g00107 Cme-Chr9:812640 Cme06g00332 Cme-Chr6:2050839 1.98E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1716 Blo01g01682 Blo12g00812 . Bda03g00360 Bpe02g00260 Bpe04g00320 Bma04g00337 Bma01g02448 . . Cma01g00877 Cma09g01291 Car01g00802 . Sed03g0698 Cpe06g00975 . Bhi04g02550 Tan11g0043 Cmetu03g0129 . Hepe02g3468 . Lcy10g2361 Cla08g00152 Cam08g0148 Cec08g0103 Cco08g0213 . Cmu08g0149 Cre08g0132 Cone4ag1154 . . . . . . Cme09g00107 . . Bda11g00922 . . . . . Sed11g1774 Cmo01g00920 Cmo09g01249 . . . Car09g01106 . Cpe02g00986 Bhi06g00143 Tan10g1858 Cmetu09g1009 . . . . Cla11g00799 Cam11g0836 Cec11g0820 Cco11g0822 Clacu11g1022 Cmu11g0885 Cre11g1279 Lsi08g00154 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001593 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00107 Cme_Chr09 FPKM 7.243243 10.438667 0.357353 1.517062 0.0 0.0 0.0 0.0 0.0 0.0