Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00120 ATGACTTATGATCATTTGGATCGATCTAAAAGCTATTCAGTTGCTTCAGGGCCAGGTTCTGTTTCAAAGCCTGCACCTGAATTGAAGCTTTATCAGTTTGTTGTATTCTGTATTCCAATTCTTTTCACGTTCATTCTTCTTTTCCTTTTCTATCTCCTTTATCTTCGTCGACGAAGGGCCGATTGGACTTCGATTCGAATGCGAACTTCAGCTGCTGCTACTAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAGGAGTTCAGAGAGATGCTTCCTATCATTGTATACAATGAGACATTCTTTGTCACTGATACACTATGTTCAGTTTGTTTAGGAGAATACAAAACCGAAGATAAACTTCAGAAAATACCAACATGTGGGCATGTATTTCACATGGACTGCATTGATCATTGGCTAGCCAACCACAATACTTGCCCACTCTGCCGTCTCTCCATCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACATGAATCTTCGGACGAACCACAATGCGAAGAACCACCTCCTCCACATAGTAATCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 41.58 MTYDHLDRSKSYSVASGPGSVSKPAPELKLYQFVVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAATNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPTCGHVFHMDCIDHWLANHNTCPLCRLSILSPSSQPPHIQIDMGHESSDEPQCEEPPPPHSNQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 891745 894237 + MELO3C022123.2.1 Cme09g00120 336980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00120 197 MobiDBLite consensus disorder prediction 161 197 - -
Cme09g00120 197 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 159 - -
Cme09g00120 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cme09g00120 197 Pfam Ring finger domain 109 151 IPR001841 -
Cme09g00120 197 SUPERFAMILY RING/U-box 93 162 - -
Cme09g00120 197 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 10 159 - -
Cme09g00120 197 MobiDBLite consensus disorder prediction 1 22 - -
Cme09g00120 197 SMART ring_2 109 150 IPR001841 -
Cme09g00120 197 MobiDBLite consensus disorder prediction 1 18 - -
Cme09g00120 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00120 Cme-Chr9:891745 Cme09g01852 Cme-Chr9:22741769 4.13E-27 dispersed
Cme09g01782 Cme-Chr9:22267005 Cme09g00120 Cme-Chr9:891745 1.23E-12 dispersed
Cme11g01019 Cme-Chr11:14663141 Cme09g00120 Cme-Chr9:891745 1.73E-10 dispersed
Cme09g00120 Cme-Chr9:891745 Cme05g00554 Cme-Chr5:5378972 1.07E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00120 K19039 - csv:101219324 370.548