Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00121 ATGAGCACAAGCAGGATGATGAAGCTTACGCGCTTGTTTTCACGGAACCAGCTATTTGAACAAATTGTATGTAAGAAAGATGGTTATGTTGGACATCCTTTGGGATCACACCCTTTCTCAACTCGTGCTGGGATTCCAAATATTACACAGAATTTTACTCATACAGTGACAAAGAATGCAGGTGGTCGAGCTTTTGTTTCCTATCATGTGTATAAGGGCAAAGCTGCAGTCTCCATTGAACCTTGTATGCCAACTTTCACTAAAGTAGAGTCTGGGAATCTTATAATAGATCGACGTGGTTCAATAATGCTGACATTCGCTCCTGCCATGGGCGAGCGCAAGTATGATTGGACAAGGAAACAGTTGTTTGCGTTGTCCGCAACAGAGGTTGGTTCTTTAATCAGTATGGGTCCCAAGGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAACTTAGCTATTAAGGCTCATACAGATGGCAACGGCTATATGATCTCTTTGAATGTTGTTAATAAACCACAAAACACCAACGATTTCTTGAGCCTTCCCTTCACAACAGGCGAATTTTCTGTGCTGAAGACTGCTTGCAGTTTTGCTCTGCCTAGCCTTCTTGGTTGGGACCGGGTGTTCAATCCTAATATTGGCATGGGTAACGGTTTTCAATCAAAAAGAATTGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 741 42.51 MSTSRMMKLTRLFSRNQLFEQIVCKKDGYVGHPLGSHPFSTRAGIPNITQNFTHTVTKNAGGRAFVSYHVYKGKAAVSIEPCMPTFTKVESGNLIIDRRGSIMLTFAPAMGERKYDWTRKQLFALSATEVGSLISMGPKDSCEFFHDPGMLSSTAGQVRKNLAIKAHTDGNGYMISLNVVNKPQNTNDFLSLPFTTGEFSVLKTACSFALPSLLGWDRVFNPNIGMGNGFQSKRIDREALSLEWER 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 897751 908053 - MELO3C022122.2.1 Cme09g00121 336981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00121 246 Pfam Whirly transcription factor 70 204 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cme09g00121 246 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 246 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cme09g00121 246 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 6 246 - -
Cme09g00121 246 Gene3D Transcriptional Coactivator Pc4; Chain A 56 228 IPR009044 GO:0003677|GO:0006355
Cme09g00121 246 SUPERFAMILY ssDNA-binding transcriptional regulator domain 62 245 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01291 Cme-Chr3:22474231 Cme09g00121 Cme-Chr9:897751 3.43E-52 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41903 PF08536 Whirly 4.40E-53 CL0609 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00121 - - csv:101219085 438.343