Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00161 ATGGCCGTTCCCGTGGTTCAGTTCCCGATCTTCTTGGCTGTCAGAGTCCTCGGAATGCTTGTGGCAGCTCTTCTTTTCATTTGGACCTTGCATTTCCGTGGAGGATTGGCACTTATCTCAGACAACAAGGATCATATCTTCAATGAGGCTCGGAAGGCGAAAGGGCTGAGAAAGGGGGGAAAACGAAAGGCGTTTTCTGGTCACCTTGAGCTGGATGGTGCTTGTGTGGCGTGTGTGGCACGATGTATTGATGCAGCAATGTTAGCATACAAGACAGTTTCAGGAACCAAAAACTTCAAAAAACTAGTTCATCTCACTCTCCAATTTGTTGCATTCTTTTTAAGCCTAATTGGCATATGGGCTGCCCTGAAGTTCCACAACGACAAAGGAATCGACAACTTTTACAGTTTACATTCATGGTTGGGCTTAGTTTCTATCTTTCTATTTGGCATCCAGTGGTCTGCAGGTTTTGTAACCTTTTGGTACCCAGGTGGGTCTAGAAACAGCAGAGCTACTCTATTGCCATGGCATGTTTTCTTTGGCGTTTACATATATGGCCTTTCCATTGCTACAACCGTAACTGGATTGTTGGAAAAAGCTACATTCCTTCAAACTAGTAAGGTAATTTTACGTTATTCGAACGAGGCTTTGCTGATAAATTCATTGGGTGTCCTCATTGTTCTCTTGGGAGGTCTCGTAATTTTGGCGGTTATCGCTCCATCGAACGCTAAAGGTGATATTGACAGAGGGCTAGCAGAATAG 762 44.36 MAVPVVQFPIFLAVRVLGMLVAALLFIWTLHFRGGLALISDNKDHIFNEARKAKGLRKGGKRKAFSGHLELDGACVACVARCIDAAMLAYKTVSGTKNFKKLVHLTLQFVAFFLSLIGIWAALKFHNDKGIDNFYSLHSWLGLVSIFLFGIQWSAGFVTFWYPGGSRNSRATLLPWHVFFGVYIYGLSIATTVTGLLEKATFLQTSKVILRYSNEALLINSLGVLIVLLGGLVILAVIAPSNAKGDIDRGLAE 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1234506 1238096 - MELO3C022085.2.1 Cme09g00161 337021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00161 253 PANTHER CYTOCHROME B561-RELATED 1 48 IPR043205 GO:0016491
Cme09g00161 253 PANTHER B561, PUTATIVE-RELATED 85 249 - -
Cme09g00161 253 PANTHER B561, PUTATIVE-RELATED 1 48 - -
Cme09g00161 253 Pfam Eukaryotic cytochrome b561 82 202 IPR006593 -
Cme09g00161 253 CDD Cyt_b561_ACYB-1_like 86 204 - -
Cme09g00161 253 ProSiteProfiles Cytochrome b561 domain profile. 13 238 IPR006593 -
Cme09g00161 253 SMART 561_7 85 196 IPR006593 -
Cme09g00161 253 PANTHER CYTOCHROME B561-RELATED 85 249 IPR043205 GO:0016491
Cme09g00161 253 Gene3D - 1 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00023 Cme-Chr4:159143 Cme09g00161 Cme-Chr9:1234506 2.50E-54 transposed
Cme09g01298 Cme-Chr9:17985551 Cme09g00161 Cme-Chr9:1234506 6.12E-36 transposed
Cme10g01545 Cme-Chr10:19760460 Cme09g00161 Cme-Chr9:1234506 8.90E-34 transposed
Cme10g00300 Cme-Chr10:1960972 Cme09g00161 Cme-Chr9:1234506 5.92E-27 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00161 K08360 - csv:101212633 377.481