Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00162 ATGGGAATGAAGAGAACTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGATTTGGGTTTCTTCAATAAATGCTTTGTTATCACCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATGCTGTTGACCCATGTAGTTGGACTATGAGGAACCCCAAGCCAGAACCTGTCTGGAACTCTTTCTTCAACCATTGGGAATTTAACAAACCTTCAAATTGTAACAACAATATCACAGGTCCAATTCCACCAGAGTTTGGGAGGCTCTCAAAGCTTCAAACACTTGATCTATCAAATAATTTCTTCACGGGGGAAATTCCTTCTTCTTTAGGCCATTTAAGAAGCCTACAGAGGCTTAACAATAACAGTCTTTCTGGAGCAATTCCAATGTCTTTAGCTAACATGACACAGCTTGCCTTTCTTGATGTGTCTTATAATAACATCAGTGGACCTCTTCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACCGGGTCCGAGGCCGGTTGCCATGGTACAACTCTAATGCCTATGTCCATGAATTTGAACAGTACGCAAACTGGTTTACCTGCTGTGAGATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCTTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAGACGAAGCAATCGACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATTTGAGAAGGTTTCAATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAACGTTTACAAAGGAATTCTTTCGGATGGAACAGTTGTAGCTGTTAAGAGGCTCAAAGATGGGAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTGGCCGTGCACCGTCATCTCCTCAGATTATATGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGAATTGCTATAGGAGCTGCTAGGGGATTGTTATACCTACATGAACAGTGCGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAAGCTGTCGTTGGAGATTTCGGGTTAGCAAAACTTTTGGATCATCAAGATTCTCATGTCACTACTGCTGTGAGAGGCACTGTGGGACATATAGCTCCCGAGTATCTATCCACTGGACAGTCGTCTGAGAAAACAGATGTTTTCGGATTCGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAATTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAGGATTCATCTAGAGAAGAAGCTCGAAGTGTTAGTGGACAAGGATCTAAAAGCCAACTATGACAGAGTTGAACTAGAAGAAATGGTCCAAGTGGCTTTGTTATGCACACAATACTTACCAGGACATAGACCAAAAATGTCAGAAGTTGTGAGAATGCTTGAAGGAGAAGGACTTGCTGTGAGATGGGAAGCTTCTCAAAGAGTTGATTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCTTCATTGCTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1830 42.46 MGMKRTEATVSCLVASLLIWVSSINALLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDAVDPCSWTMRNPKPEPVWNSFFNHWEFNKPSNCNNNITGPIPPEFGRLSKLQTLDLSNNFFTGEIPSSLGHLRSLQRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNRPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKRIHLEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1255569 1259992 - MELO3C022084.2.1 Cme09g00162 337022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00162 609 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 10 609 - -
Cme09g00162 609 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Cme09g00162 609 Gene3D Transferase(Phosphotransferase) domain 1 366 578 - -
Cme09g00162 609 ProSiteProfiles Protein kinase domain profile. 289 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00162 609 Gene3D Phosphorylase Kinase; domain 1 258 365 - -
Cme09g00162 609 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cme09g00162 609 SUPERFAMILY L domain-like 35 181 - -
Cme09g00162 609 Pfam Protein kinase domain 290 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00162 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 609 - -
Cme09g00162 609 SMART serkin_6 289 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00162 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Cme09g00162 609 Gene3D Ribonuclease Inhibitor 33 198 IPR032675 -
Cme09g00162 609 SUPERFAMILY Protein kinase-like (PK-like) 265 559 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00162 Cme-Chr9:1255569 Cme10g00319 Cme-Chr10:2096713 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65136 PF00069 Pkinase 5.30E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00162 - - csv:101209443 1136.32