Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00179 ATGAAGATTGGCTCCAGCAAGTCGCCCCCACGTTTTGTAAAACCGCCCCCACTATTATCCACCGAAGGATTTTTCTGGGGTTACCGAGTGGACTTCGGAGATTCCATTTTCGACCTTCAGGACTTGGTCACCGGAGGAAATTTCATCGTTTCAGAGAGAGGGTCTGTGAATTGGATTATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCTTCATTTTTTTCACCTCCTTCTCCTTCTCCTCCGGCGGAATCTGCAACCTCTCCCTCATCTCCAACATCCTCTGTGCCTAATCAGACGGGTGAACCTCCTTCATCGCCTTCTGGTTCTTCAGCTCCACCTCCTCAATCACCCCCAGCTGCTCCTGATGCTTCTCCTACATTGTCTCCTCCAGTGACAGCATCACCTACTCCACCAACAACCTCACCTCCTTCTCCCCCTTCAGGTTCCACACCTTCACCCCCACAATCTTCGCCCTCACCACCGCCACCTTCGACACCAACCTCCCCACCACCACCTTCAACATCAACCTCTCCACCATCACCTTCAACAACAACCTCTCCACCACCACCTTCAACAACATCACCATCACCACCTCCCCCCGAGGGATCCACTCCCTCTCCTCCTCCACCTGAAGCTTCACCTTCCCCACCTGATTTGTCGCCTCCGCCGCCAGCAGCAGCAGAAGGTGGTTCTCCACCTCCTCCATCCAATCCTAGTCCTCCATCTTCAACTCCTTCTCCCCCTCCCCCCGATACGATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAACCACCTAAAGTATCTCCCCCATCCCACAAGGTTTCTCCTCCTCCTCCTGATTCTCAATCTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTCCTTCAGTCCCTTCATCGTCTGCTCCTCCTCCATTTAGTGATCCTGGTTCTCCAACTAATTCTTCTGGTGGAAGTCCTGTTACCCCTCCAATTTCTGTTACACCAGAACGACCAATTCCACCAATCAATGGTACCAATACTACAGCAAATAGCTCAGCCACTGGTAAAGGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTATTGCTCAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAGTATCCCTTACACCATGGCTTCTCCTTTTTCCTCCCAAAACTCAGATTCCGTCTTCCTAAGGCCCCATTCTTCAGTTCCTGTATTAGGAAGTCGTACTGATAGTGAGTTCAAGTATTCACCATCAGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAATGGGTTCTCATCGAACAATCTTTTGGGGGAAGGTGGTTTTGGTTGTGTGTACAAAGGCACCCTTGCAGATGGAAGAGACGTAGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCTGAAGTTGAGATTATTAGCCGAGTACACCATCGGCATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACATGCCAGTTTTGGCTTGGGGTACACGTGTTCGAATTGCTGCTGGCGCAGCTCGTGGAATTGCTTATCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTTCTTGATATCAACTTTGAAGCTCAGGTTGCTGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTGATGGGAACCTTTGGATATATGGCTCCAGAGTATGCAACAAGTGGGAAATTGACAGACAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTGATTACTGGTCGAAAGCCTGTAGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCATTGCTTGCGCAAGCTATTGAGGACGAGAATTTTGATGAATTGGTGGATCCAAGGCTAGACAACAATTACATAGATAGAGAAATGTTTCGGATGATTGAAGCAGCAGCCGCTTGCGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGACGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTCGATTCAGCTGAACATTCTGCTCAGATTAGAATGTTTCAAAGAATGGCTTTCGGCAGTCAAGATTACAGTTACGGTTACTCCGATCGAGATCGAAGTCGAAGTTATAGTCAAAGTCAGAGTAGCTGGAGTAGAGAATCCAGAGAACAAAGTCCCTCGGCACCTATGAATCGATCCCGGCAATGGAACATCTGA 2496 47.8 MKIGSSKSPPRFVKPPPLLSTEGFFWGYRVDFGDSIFDLQDLVTGGNFIVSERGSVNWIMASPSPSISPPENPSDSSFFSPPSPSPPAESATSPSSPTSSVPNQTGEPPSSPSGSSAPPPQSPPAAPDASPTLSPPVTASPTPPTTSPPSPPSGSTPSPPQSSPSPPPPSTPTSPPPPSTSTSPPSPSTTTSPPPPSTTSPSPPPPEGSTPSPPPPEASPSPPDLSPPPPAAAEGGSPPPPSNPSPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGEPPKVSPPSHKVSPPPPDSQSPPSDNSPPPRSTVPSPPPSVPSSSAPPPFSDPGSPTNSSGGSPVTPPISVTPERPIPPINGTNTTANSSATGKGGFSTGTSVAVGSVVGVLLLSLVIMAMWFVQKRKRRKKSIPYTMASPFSSQNSDSVFLRPHSSVPVLGSRTDSEFKYSPSEGGGVGNSRSFAYDDLHQATNGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENMPVLAWGTRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFDELVDPRLDNNYIDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRSRSYSQSQSSWSRESREQSPSAPMNRSRQWNI 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1371472 1378324 + MELO3C022068.2.1 Cme09g00179 337039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00179 831 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 210 802 - -
Cme09g00179 831 Pfam Protein tyrosine and serine/threonine kinase 477 747 IPR001245 GO:0004672|GO:0006468
Cme09g00179 831 MobiDBLite consensus disorder prediction 66 91 - -
Cme09g00179 831 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Cme09g00179 831 SMART serkin_6 474 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00179 831 SUPERFAMILY Protein kinase-like (PK-like) 457 747 IPR011009 -
Cme09g00179 831 MobiDBLite consensus disorder prediction 793 831 - -
Cme09g00179 831 MobiDBLite consensus disorder prediction 797 831 - -
Cme09g00179 831 MobiDBLite consensus disorder prediction 354 370 - -
Cme09g00179 831 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 210 802 - -
Cme09g00179 831 MobiDBLite consensus disorder prediction 112 331 - -
Cme09g00179 831 MobiDBLite consensus disorder prediction 61 370 - -
Cme09g00179 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 594 606 IPR008271 GO:0004672|GO:0006468
Cme09g00179 831 MobiDBLite consensus disorder prediction 92 111 - -
Cme09g00179 831 Gene3D Phosphorylase Kinase; domain 1 450 549 - -
Cme09g00179 831 Gene3D Transferase(Phosphotransferase) domain 1 550 762 - -
Cme09g00179 831 ProSiteProfiles Protein kinase domain profile. 474 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme09g00179 831 CDD STKc_IRAK 480 750 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00179 Cme-Chr9:1371472 Cme11g00187 Cme-Chr11:2262590 7.62E-147 dispersed
Cme02g01519 Cme-Chr2:22243464 Cme09g00179 Cme-Chr9:1371472 2.64E-83 transposed
Cme04g00901 Cme-Chr4:11902299 Cme09g00179 Cme-Chr9:1371472 1.08E-25 transposed
Cme10g00523 Cme-Chr10:3371185 Cme09g00179 Cme-Chr9:1371472 3.56E-169 transposed
Cme10g00313 Cme-Chr10:2046577 Cme09g00179 Cme-Chr9:1371472 1.58E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65137 PF07714 PK_Tyr_Ser-Thr 1.40E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00179 - - csv:101211665 903.664