Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme09g00197 | ATGGGTGCTGTCTGCTGTTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTCTATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAAAGCTTCTTAAATGCTTACACATTGATTTTTCGAAGAGGAGAAGTACATTCTGTCTCCTCATCAATTCAAGGGGCAACATCTATGAATTCGACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATACATCCGCTTGCAGCGGGATGGGTTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGAAGTTGATACAGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAACGGGTCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCTCTGGACTTGGATATGCATATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCGGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGCAATGGCATTCGATGAAACGACTTGA | 684 | 42.11 | MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGLGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKAMAFDETT | 227 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1532189 | 1537281 | + | MELO3C022050.2.1 | Cme09g00197 | 337057 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme09g00197 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 226 | - | - | |
| Cme09g00197 | 227 | SUPERFAMILY | RING/U-box | 172 | 222 | - | - | |
| Cme09g00197 | 227 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
| Cme09g00197 | 227 | Pfam | RING-H2 zinc finger domain | 174 | 217 | IPR024766 | GO:0008270 | |
| Cme09g00197 | 227 | MobiDBLite | consensus disorder prediction | 56 | 89 | - | - | |
| Cme09g00197 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 223 | IPR013083 | - | |
| Cme09g00197 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Cme09g00197 | 227 | MobiDBLite | consensus disorder prediction | 103 | 130 | - | - | |
| Cme09g00197 | 227 | MobiDBLite | consensus disorder prediction | 56 | 76 | - | - | |
| Cme09g00197 | 227 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 226 | - | - | |
| Cme09g00197 | 227 | SMART | ring_2 | 177 | 217 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g00168 | Cme-Chr6:1026283 | Cme09g00197 | Cme-Chr9:1532189 | 3.16E-26 | dispersed | |
| Cme09g00197 | Cme-Chr9:1532189 | Cme11g01927 | Cme-Chr11:27334695 | 4.51E-11 | dispersed | |
| Cme09g00197 | Cme-Chr9:1532189 | Cme09g01778 | Cme-Chr9:22224576 | 2.51E-28 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme09g00197 | - | - | csv:101207736 | 468.774 |