Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00204 ATGAATGCGAATAGTTCGCGATTTCAATCGTTTGGTCAAACTGAGATCAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCGTAGGAGCTGGCCTCTTTACTGGGATTACTGTTGCACTGTACCCTGTTTCTGTTGTGAAAACGAGGATGCAGGTTGCTGTAAAGGATTCTGCCGAGAGAAATGCCCTGTCTGTTATTAAAGGCTTACTGAAGAATGATGGGGTTCCTGGTCTTTATAGAGGGTTTGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATCATCTTTCTTACTGCTTTAGAGACTACCAAAGTGGGAGCCTATAAACTGGTTGAGCCATGTAAATTTTCTGAACCTACACAGGCTGCTTTGGCAAATGGGTTAGCTGGCATGACTGCATCACTTTTTTCTCAAGCTGTTTTCGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCCGGTAATACAAGATATACTGGGGGTTTGGATGTTGCTCGTAAACTGATAAAGTCTAATGGGATTCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATGACCTACTCTCCATCTAGTGCGGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCGTCATCTGGAGGTTCTTAGGTCAAAACTCTGCTTCAGAGAAATTTGCTCCTAGCCATTCCCAACTTATTTCAGTTCAAGCTGCGGGTGGAATTATTGCAGGTGCAACAGCTTCCTGCATTACAACACCATTGGACACTATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATCGCTGAGGATGGGTGGAAAGGTTTTTATAGGGGGCTGGGTCCTCGGTTCTTCAGCATGTCAGCCTGGGGAACATCGATGATATTGGCTTACGAGTACTTGAGTAAGACTTCTTTAGCCTGCACTTTATTTATGATACATATGAACACATGCATACACACATATCTACGCCAATTAAAGACACCAATTTCTTATGTTGATGTCAACATCTTCAAGCAGAAAATATTCATCTTTTATGGGAATCCTTATAGCTAA 1086 42.17 MNANSSRFQSFGQTEINWDKLDKAKFYGVGAGLFTGITVALYPVSVVKTRMQVAVKDSAERNALSVIKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAYKLVEPCKFSEPTQAALANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNTRYTGGLDVARKLIKSNGIRGLYKGFGLSVMTYSPSSAVWWASYGASQRVIWRFLGQNSASEKFAPSHSQLISVQAAGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLSKTSLACTLFMIHMNTCIHTYLRQLKTPISYVDVNIFKQKIFIFYGNPYS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1610689 1617538 + MELO3C022043.2.1 Cme09g00204 337064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00204 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Cme09g00204 361 Gene3D Mitochondrial carrier domain 28 317 IPR023395 -
Cme09g00204 361 Pfam Mitochondrial carrier protein 124 211 IPR018108 -
Cme09g00204 361 Pfam Mitochondrial carrier protein 28 106 IPR018108 -
Cme09g00204 361 Pfam Mitochondrial carrier protein 236 313 IPR018108 -
Cme09g00204 361 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Cme09g00204 361 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cme09g00204 361 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cme09g00204 361 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 315 - -
Cme09g00204 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Cme09g00204 361 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Cme09g00204 361 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 315 - -
Cme09g00204 361 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02825 Cme-Chr1:35190687 Cme09g00204 Cme-Chr9:1610689 2.34E-61 dispersed
Cme06g00821 Cme-Chr6:5624870 Cme09g00204 Cme-Chr9:1610689 9.42E-104 dispersed
Cme09g00204 Cme-Chr9:1610689 Cme11g01725 Cme-Chr11:25323026 6.10E-10 dispersed
Cme09g00204 Cme-Chr9:1610689 Cme07g00195 Cme-Chr7:1306859 3.23E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00204 K15121 - csv:101206140 600.127