Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00231 ATGTCGCCGCCGACGCAACCCCTGTCGTGGAATGCTACGCATGTACCCAAGTCGGCGTCCCAGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAACAACCCGAATGGGAAGCCTCCGCGGGCTCTTCCCTGGTTCCAATCCAACCCACAAAATCCTCACCACCGCCCCGACATTCTTCCGCGGGTTGCTTCGGGACGGTTCTGGACCCAAGAAAGAAACCGGTTCAGAGATGGAACCGGGTTCTGTTACTGGCCCGGGGAATGGCTCTTGCGGTTGATCCACTTTACTTCTATGCTCTGTCGATTGGAAGAGGAGGGTGGCCTTGCCTGTACATGGATGGAGGGTTGGCCGGCGGGGGTGACGGTGGTTCGAACGTGTCTTGATATAGTGCACCTGTGGCACGTGTGGCTTCAGTTCAGGCTTGCTTACGTGTCGAAAGAGAGTATGGTGATTGGGTGTGGGAAACTGGTGTGGAATGCACGTGATATTGCTTCTCACTATGTTCGTTCTTTTAAAGGCTTTTGGTTTGATGCCTTTGTTATCCTCCCTATTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTGATCAGAGAAGAGAGAATCAAACTTATAATGACAGTAATCTTATTAATGTTTTTGTTCCAATTCCTCCCAAAAGTTTACCACTCCATTATTTTAATGAGAAGAATGCAGAAGGTTACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCCTCTCATGTTGCTGGAGGTTGTTGGTATGTTCTTGCAATACAGCGAGTTGCTTCTTGTATCCAACAACATTGTGAGAGAAACAACTGCAACTTATCTTTGTCTTGCTCTGAGGAGGTGTGTTATCGGTTTCTCTCATCACCTACAACAATTGGAAGTTTGTGTGGTCGGAATTCAACTGCTACGTTTAGGAAGCCACTATGTTTGGATGTTAAAGGTCCGTTCGCCTATGGCATCTACAAGTGGGCTCTCCCTGTCATTTCTAGTAATTCAGTTGCTGTCAAAATCCTTTATCCTATCTTTTGGGGATTAATGACTCTCAGCACCTTTGGAAATGATCTTGAGCCTACGAGTAATTGGCTGGAAGTGTGCTTCAGTATTTGCACGGTGCTTAGTGGATTGTTGCTTTTCACCCTTTTGATTGGTAATATTCAGGTACTTTTGCATGCTGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGGCAATTGCCGTCTCGTTTGAAACATCGAGTTCGACACTATGAGCACCAGAGATGGGCAGCTATGGGAGGAGAAGATGAGATGGAACTAATCAATGATTTGCCTGAAGGTCTTAGAAGAGATATCAAACGTCATCTTTGTGTTGACCTAATCAGAAAGGTGCCTCTCTTTCAAAACCTGGAGGAGCTGATTCTAGACAACATATGTGATCGAGTCAAGCCACTTGTATTCTCCAAAGATGAAAAGATTATCAGAGAAGGAGATCCTGTTCCAAGAATGTTATTCATAGTGTGTGGACGAGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCGACAAGTTTTATTGAACCGGGAGGCTTTCTTGGTGATGAACTGCTATCGTGGTGTCTTCGTCGCCCATTTCTGGAGAGACTTCCAGCTTCATCCGCTACATTTGTTTGCATTGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTCGCGAATGAGAGACTGAAGAGAACAGCAAGATTTTACTCTTCCAACTGGAGAACATGGGCTGCTGTTAACATACAACTTGCTTGGCGTAGATACAGAAAACGGATGAGGCGTCCAGCGATAGCTGTGGTGGAAAACGGAAGCACTGAACGTCGGCTTTTGCAGTATGCTGCAATGTTCATGTCATTCAGACCACATGATCATCTTGAATAG 2013 46.3 MSPPTQPLSWNATHVPKSASQPSTPPAATTPTNNPNGKPPRALPWFQSNPQNPHHRPDILPRVASGRFWTQERNRFRDGTGFCYWPGEWLLRLIHFTSMLCRLEEEGGLACTWMEGWPAGVTVVRTCLDIVHLWHVWLQFRLAYVSKESMVIGCGKLVWNARDIASHYVRSFKGFWFDAFVILPIPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCERNNCNLSLSCSEEVCYRFLSSPTTIGSLCGRNSTATFRKPLCLDVKGPFAYGIYKWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLKHRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLEELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSFIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARFYSSNWRTWAAVNIQLAWRRYRKRMRRPAIAVVENGSTERRLLQYAAMFMSFRPHDHLE 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1767519 1773923 + MELO3C022020.2.1 Cme09g00231 337091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00231 670 Gene3D Jelly Rolls 481 599 IPR014710 -
Cme09g00231 670 Pfam Cyclic nucleotide-binding domain 503 591 IPR000595 -
Cme09g00231 670 Gene3D Helix hairpin bin 409 474 - -
Cme09g00231 670 MobiDBLite consensus disorder prediction 1 48 - -
Cme09g00231 670 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2-LIKE 101 670 - -
Cme09g00231 670 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 101 670 - -
Cme09g00231 670 Gene3D - 111 407 - -
Cme09g00231 670 ProSiteProfiles cAMP/cGMP binding motif profile. 483 562 IPR000595 -
Cme09g00231 670 CDD CAP_ED 483 590 IPR000595 -
Cme09g00231 670 MobiDBLite consensus disorder prediction 1 27 - -
Cme09g00231 670 SMART cnmp_10 483 608 IPR000595 -
Cme09g00231 670 Pfam Ion transport protein 121 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme09g00231 670 SUPERFAMILY cAMP-binding domain-like 410 597 IPR018490 -
Cme09g00231 670 SUPERFAMILY Voltage-gated potassium channels 114 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02074 Cme-Chr6:26030983 Cme09g00231 Cme-Chr9:1767519 0 dispersed
Cme09g00231 Cme-Chr9:1767519 Cme05g01491 Cme-Chr5:24333092 2.08E-116 dispersed
Cme09g00231 Cme-Chr9:1767519 Cme09g01973 Cme-Chr9:23623350 7.44E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00231 K05391 - csv:101203560 1121.3