Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00236 ATGGCTAAGAAGGATGATTCTGCAGCAAGGCCTCCACTTCAACGCCCCACTATTACTCTCCCTCCTCGTCCTTCTATGGAGGCTTTTTTCACCGGCGGTCCCACTGGGGTTAGCCCTGGTCCTATGACTCTTCTTTCAAGTTACTTCGCCGACGGTGCCGTTGACTCTCCTTCCTTCTCCCAGCTTCTCGCTGGAGCTATGGCTTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCTACTCCCAATTATTATGCCAAGGATGGACCCGGCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGGTGAATTTAGTGGTAGCTCGTTCTCCTTTGTTCTCGGTTCCTCCGGGGCTTAGTCCTTCGGGGTTGCTTAACTCGCCGGGGTTTTATCCTCCTCAGAGTCCATTTGGAATGTCGCATCAGCAGGCATTGGCTCAAGTTACTGCCCAAGCAGCATTGGCAAATTCTCATATGCATATGCAGCAAGCGGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTAGCTCGTGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATAATACCCTCCACATCAGACACTAAAAGTCTGATTGCAGAATCGACAGAAGTTTCTCATTCTGATAGAAAATATCAACCTCCTCCTCCCCCCCATGGCTCCGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATTTCCACGAAGCTATTACAAATGCACTCATTTGAATTGTCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAGATTACTGAAATTATTTACAAAGGCCAGCACAACCACGACCCTCCTCCAGCCAACAAACGTGCAAGAGATAATGTTGAGCCAGCTGGATGTACAAATTCATTGATTAAGCCTGAATGTGGCTTGCAAAACCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGGACGAGCTGATACAGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGCGGCAGAACATTGACGCAGGGACGTCAAGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTCCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGACAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGGTCTTCAACAGACTCGAAAGCTGTTGTAACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCCAGAAACAGCAGCCACCACACTGTCAACAACACTGTCCACCATATCAAACCACTCAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAACTAATGACCAGAGACCTGCCGTTTTGCAGCTTAAAGAAGAACAAATCACTGTGTAA 1521 46.02 MAKKDDSAARPPLQRPTITLPPRPSMEAFFTGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGPGSELEFGMKQSKPVNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLARDPSFSLDEASQLAIIPSTSDTKSLIAESTEVSHSDRKYQPPPPPHGSDKPADDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHDPPPANKRARDNVEPAGCTNSLIKPECGLQNQAGILNKSSENVQLGSSDSEGRADTEITDDRDEDEPNPKRQNIDAGTSSVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHHIKPLKVVAQKHPLLKEMEFGTNDQRPAVLQLKEEQITV 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1797171 1802054 + MELO3C022014.2.1 Cme09g00236 337096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00236 506 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 MobiDBLite consensus disorder prediction 283 305 - -
Cme09g00236 506 SUPERFAMILY WRKY DNA-binding domain 230 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 MobiDBLite consensus disorder prediction 161 183 - -
Cme09g00236 506 MobiDBLite consensus disorder prediction 197 237 - -
Cme09g00236 506 MobiDBLite consensus disorder prediction 1 33 - -
Cme09g00236 506 PANTHER WRKY PROTEIN 10 505 - -
Cme09g00236 506 MobiDBLite consensus disorder prediction 341 359 - -
Cme09g00236 506 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 Gene3D WRKY domain 226 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 Gene3D WRKY domain 377 453 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 Pfam WRKY DNA -binding domain 233 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 505 IPR044810 GO:0003700
Cme09g00236 506 MobiDBLite consensus disorder prediction 328 371 - -
Cme09g00236 506 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 SMART WRKY_cls 392 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme09g00236 506 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02759 Cme-Chr4:32820268 Cme09g00236 Cme-Chr9:1797171 5.73E-81 dispersed
Cme06g00007 Cme-Chr6:80360 Cme09g00236 Cme-Chr9:1797171 1.95E-19 dispersed
Cme12g00015 Cme-Chr12:206999 Cme09g00236 Cme-Chr9:1797171 6.96E-17 dispersed
Cme02g01060 Cme-Chr2:15561903 Cme09g00236 Cme-Chr9:1797171 6.48E-16 transposed
Cme06g02787 Cme-Chr6:35108962 Cme09g00236 Cme-Chr9:1797171 3.35E-18 transposed
Cme11g01709 Cme-Chr11:25170183 Cme09g00236 Cme-Chr9:1797171 1.57E-16 transposed
Cme10g00381 Cme-Chr10:2444550 Cme09g00236 Cme-Chr9:1797171 3.38E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41909 PF03106 WRKY 3.20E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00236 - - csv:101223114 1009.59