Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00257 ATGGCAATCATAACAACAATCCTCCAATTGCTTCTTTTTTTCTCAATCTTCTCCTCTGTTAATGCAGATTATGGAGGTTGGATCAGCGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGCGGCGCTTGTGGGTATGGGAATCTGTATAGCCAAGGCTATGGGACGAACACTGCAGCGTTGAGCACGGCGCTTTTCGATAATGGACTCAGTTGTGGCGCTTGTTTTGAGCTACGCTGTGTCAATGACCCTCAATGGTGTATTCCTGGCACCATTGTTGTCACTGCCACTAATTTCTGTCCTCCTGGTGGCTGCTGTGACCCTCCAAATCATCATTTTGACCTCTCTCAGCCTATCTTTCAACACATTGCTCAATATCGCGCTGGGATTATCCCCGTCGCTTACCGCAGGGTAAGGTGTAGGAGAAGTGGAGGAATAAGATTCACAATCAACGGCCATTCATATTTCAACTTAGTACTAATCACAAACGTGGGAGGCGCCGGAGATATTCATGCGGTGGCGATTAAGGGTTCAAAAACAAGATGGCAACCAATGTCTAGAAATTGGGGCCAAAATTGGCAGTCCAATTCTTATCTCAACGGACAAAGCCTCTCATTTTTGGTGACCGCTAGCGACGGCCGGAAAGTCCTCTCCTACAACGTAGCTCCCTCCGGTTGGTCCTTTGGCCAAACTTATGTCGGCGGCCAATTTCGTTATTAA 732 47.54 MAIITTILQLLLFFSIFSSVNADYGGWISAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDIHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRKVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1954077 1955475 + MELO3C021999.2.1 Cme09g00257 337117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00257 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Cme09g00257 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Cme09g00257 243 PANTHER EXPANSIN-A5 10 242 - -
Cme09g00257 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Cme09g00257 243 SMART dpbb_1 62 139 IPR007112 -
Cme09g00257 243 Gene3D - 14 145 IPR036908 -
Cme09g00257 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Cme09g00257 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Cme09g00257 243 Gene3D - 149 241 IPR036749 -
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cme09g00257 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Cme09g00257 243 PANTHER EXPANSIN-A15 10 242 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Cme09g00257 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Cme09g00257 243 SUPERFAMILY Barwin-like endoglucanases 10 167 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00257 Cme-Chr9:1954077 Cme10g01247 Cme-Chr10:13121106 8.71E-127 dispersed
Cme10g00403 Cme-Chr10:2578552 Cme09g00257 Cme-Chr9:1954077 1.94E-138 wgd
Cme12g01981 Cme-Chr12:25595789 Cme09g00257 Cme-Chr9:1954077 2.82E-111 wgd
Cme02g01876 Cme-Chr2:25344916 Cme09g00257 Cme-Chr9:1954077 5.88E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00257 K20628 - csv:101220358 491.5