Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00278 ATGGATTTAGCCCCAGCTCCCATCACTACTAGTAGTAATAACACTAAATCCCCCGACGCTGACTCCGATACTCCGACAAAGATCCCACCGTCTTTCACCAACGGCGTTCTCAAGCGCCACCACCACCACAATCACCATCACCATCATCACCATCGCCCTCCCTCCTCCTCCTCCTCCTCCTCCACGGTTGTTGTTTCTTACAAAGAATGTCTCAAAAATCATGCCGCCACTTTAGGAGCTCACGCCTTGGATGGATGTGGCGAATTTATGCCTTCCCCTTCCGCTACACCCTCCGATCCCACTTCCCTTAGATGCGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGATCCTGAAGATCCAATTTCAACTTTAGCTATCAATACAGCGCCAACTCATGTTATTGAGTATCAACCTCACCATCGTCACCACCCACCACCACCGCCACTCGCCGGTAACCGAAGCCCCAATTCGGCATCTCCTCCGCCAATCTCTTCTTCCTATTACCCATCTGCGCCACATATGTTATTAGCGCTTTCCGCTGGGTTGTCGGGTCGTCCACCGGAAAATCACACTCAGGGGAATAATTCGGTGCCGACGGTGAGTCCGAACACTCGGAAACGGTTTCGGACGAAATTTAGTAATGAACAGAAGGAGAAAATGCTGGATTTTGCCGAACGGGTGGGATGGAAAATGCAGAAACGAGATGATGATTTGGTTCGAGATTTTTGTAATCAAGTTGGAGTTGAAAGAGGGGTTCTTAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCTGATTCCAATGGCGACGTTACCGCCACCGCCATTGCCACCGTCGCCGCAGCCATCGCCACCGTCAACAATCATGAAGATGAACCAGATGGGGGCTTACATATGCATATTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 948 50.11 MDLAPAPITTSSNNTKSPDADSDTPTKIPPSFTNGVLKRHHHHNHHHHHHHRPPSSSSSSSTVVVSYKECLKNHAATLGAHALDGCGEFMPSPSATPSDPTSLRCAACGCHRNFHRRDPEDPISTLAINTAPTHVIEYQPHHRHHPPPPPLAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGRPPENHTQGNNSVPTVSPNTRKRFRTKFSNEQKEKMLDFAERVGWKMQKRDDDLVRDFCNQVGVERGVLKVWMHNNKNTMGKKPDSNGDVTATAIATVAAAIATVNNHEDEPDGGLHMHIGSNGSSSSS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2138970 2140209 + MELO3C000099.2.1 Cme09g00278 337138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00278 315 MobiDBLite consensus disorder prediction 182 206 - -
Cme09g00278 315 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 264 IPR006455 -
Cme09g00278 315 Gene3D - 192 268 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 187 206 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 294 315 - -
Cme09g00278 315 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 21 282 - -
Cme09g00278 315 Pfam ZF-HD protein dimerisation region 65 119 IPR006456 -
Cme09g00278 315 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 118 IPR006456 -
Cme09g00278 315 SUPERFAMILY Homeodomain-like 194 268 IPR009057 -
Cme09g00278 315 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 67 118 IPR006456 -
Cme09g00278 315 MobiDBLite consensus disorder prediction 139 168 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 1 31 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 36 54 - -
Cme09g00278 315 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 282 - -
Cme09g00278 315 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00278 - - - cmo:103504491 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00278 Cme-Chr9:2138970 Cme10g01673 Cme-Chr10:22954692 5.33E-50 dispersed
Cme10g00417 Cme-Chr10:2641879 Cme09g00278 Cme-Chr9:2138970 2.80E-53 wgd
Cme04g01977 Cme-Chr4:27378003 Cme09g00278 Cme-Chr9:2138970 1.63E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT2G02540 55.6 1.1e-51 200.7
Cme03g01827 . 46 234 ZF-HD Transcription Factor Family AT4G24660 50.3 5.4e-43 171.4
Cme04g01977 . 30 267 ZF-HD Transcription Factor Family AT5G39760 58.4 3.0e-50 196.1
Cme09g00278 . 24 276 ZF-HD Transcription Factor Family AT5G39760 53.7 6.2e-48 188.3
Cme09g00278 . 65 266 ZF-HD Transcription Factor Family AT1G69600 51.0 6.5e-47 184.5
Cme04g01977 . 22 298 ZF-HD Transcription Factor Family AT5G15210 51.6 2.2e-51 199.5
Cme09g00278 . 66 263 ZF-HD Transcription Factor Family AT5G15210 60.1 4.7e-46 181.8
Cme10g01673 . 75 284 ZF-HD Transcription Factor Family AT1G14440 54.5 7.1e-54 208.0
Cme04g01977 . 22 283 ZF-HD Transcription Factor Family AT3G28920 63.0 2.9e-63 239.2
Cme09g00278 . 16 265 ZF-HD Transcription Factor Family AT3G28920 59.8 2.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41913 PF04770 ZF-HD_dimer 5.20E-28 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00278 Cme_Chr09 FPKM 0.855219 0.857819 1.133425 0.740038 2.482048 2.286867 2.746664 0.71384 0.389354 0.407719