Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00279 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGACACTGTGGCTTCTTCTTTCACAGTTAGAAGTGTAAGATATGGGGAGTGTCAAAAGAACCACGCTGCCGGGGTCGGAGGGTATGCCGTTGATGGGTGTCGAGAATTTATGGCAAGTGGTGACGAAGGGACGACAGCTGGACTGACTTGCGCCGCTTGCGGTTGCCATCGGAATTTTCATAGAAGGCAAGTTGGAACTGAGGTAGTGTGTGATTGCTCTTCATCACCCTCAAATGGAACTTAA 291 49.14 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAGLTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2156099 2156985 + MELO3C021987.2.1 Cme09g00279 337139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00279 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 95 - -
Cme09g00279 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cme09g00279 96 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Cme09g00279 96 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
Cme09g00279 96 PANTHER BNAA09G02420D PROTEIN 1 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00279 Cme-Chr9:2156099 Cme08g00739 Cme-Chr8:4928339 1.46E-22 dispersed
Cme12g01993 Cme-Chr12:25643257 Cme09g00279 Cme-Chr9:2156099 2.35E-38 wgd
Cme02g01887 Cme-Chr2:25388319 Cme09g00279 Cme-Chr9:2156099 3.34E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41914 PF04770 ZF-HD_dimer 1.60E-29 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00279 - - csv:101213061 190.66