Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00279 ATGAGGAAGCGTCAAGTTGTGCTTAGAAGATCAGAAGAACCCTCAAGGGACACTGTGGCTTCTTCTTTCACAGTTAGAAGTGTAAGATATGGGGAGTGTCAAAAGAACCACGCTGCCGGGGTCGGAGGGTATGCCGTTGATGGGTGTCGAGAATTTATGGCAAGTGGTGACGAAGGGACGACAGCTGGACTGACTTGCGCCGCTTGCGGTTGCCATCGGAATTTTCATAGAAGGCAAGTTGGAACTGAGGTAGTGTGTGATTGCTCTTCATCACCCTCAAATGGAACTTAA 291 49.14 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAGLTCAACGCHRNFHRRQVGTEVVCDCSSSPSNGT 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2156099 2156985 + MELO3C021987.2.1 Cme09g00279 337139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00279 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 95 - -
Cme09g00279 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Cme09g00279 96 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
Cme09g00279 96 Pfam ZF-HD protein dimerisation region 28 79 IPR006456 -
Cme09g00279 96 PANTHER BNAA09G02420D PROTEIN 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00279 - - - csv:101213061 190.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00279 Cme-Chr9:2156099 Cme08g00739 Cme-Chr8:4928339 1.46E-22 dispersed
Cme12g01993 Cme-Chr12:25643257 Cme09g00279 Cme-Chr9:2156099 2.35E-38 wgd
Cme02g01887 Cme-Chr2:25388319 Cme09g00279 Cme-Chr9:2156099 3.34E-33 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00279 . 1 95 Zinc finger-homeobox gene family AT3G28917 78.8 8.7e-38 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41914 PF04770 ZF-HD_dimer 1.60E-29 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme09g00279 Cme_Chr09 FPKM 0.0 1.583442 0.281251 0.763946 1.885516 1.18551 1.734885 0.517674 0.401793 0.702484