Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00284 ATGAGCTATACAAATGTCCCCATCTCTCTCTATAAGAATCCATTCTCCCCACGCACTTCTTCCTTCAAATCTCCTCTTCTTCAACCTTTGACCACTGCTCTAACTCTCACTCTTAACTTCATTTCTCTTTCTTCTTCCCCTGTTTTCCCCGGACCTCCAATGGCGGAACCGGTTACAGAGCCTAAGGCATTACCCGAACCCGAAAAGAAGAAAGAACAGAGCCTTCCTTTTCACCAACTCTTCTCTTTTGCAGACAAATACGACTGGTTTCTCATGATCCTTGGTAGTTTTGGTGCCATTATCCACGGCTCTTCCATGCCGGTTTTCTTCCTCCTTTTCGGCGAAATGGTTAACGGATTCGGCAAAAACCAATCCAATTTTCACAAAATGACAGCTGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCCTACGCCGAGATCGCATGTTGGATGTACACAGGGGAAAGACAAGTAAGCACATTGAGAAAAAAGTATTTAGAAGCTGTTTTGAAACAAGATGTTGGATTCTTCGACACTGATGCAAGAACAGGGGATGTTGTTTTTAGTGTTTCAACAGACACTCTTCTTGTACAAGATGCAATCAGTGAGAAGGTGGGGAACTTCATTCACTATCTTTCGACTTTCTTGGCTGGATTGGTTGTGGGTTTTGTGTCAGCATGGAGATTAGCTCTTTTGAGTATAGCAGTAATTCCTGGAATAGCTTTTGCTGGTGGTTTATATGCTTATACTCTCACTGGTCTTACTTCAAAGAGTCGAGAATCCTATGCAAATGCTGGCATCATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCTTTGAATTCCTATTCAGATTCAATTCAAAACACTTTGAAAATTGGATACAAAGCAGGAATGGCTAAAGGGTTGGGTCTTGGTTGTACTTATGGCATTGCTTGTATGTCTTGGGCACTTGTTTTCTGGTATGCTGGTGTTTTCATCCGAAACGGACAAACAGACGGTGGTAAAGCCTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGTTTGGGGCAGTCATTTTCCAATTTGGGAGCATTCAGTAAAGGGAAAGCAGCAGGGTATAAATTGATGGAGATTATCAAACAGAAGCCTACAATAATTCAAGACCCATTAGATGGGAAATGTTTGGGTGAAGTTAATGGCAACATTGAGTTCAAAGATGTAAGCTTTAGCTACCCATCTAGACCGGATGTGATGATCTTTAGGGATTTCTCCATTTTCTTCCCGGCCGGGAAAACAGTGGCTGTTGTCGGCGGTAGCGGTTCCGGGAAAAGCACCGTTGTTTCTCTCATTGAAAGATTCTATGATCCCAATCAAGGGCAGGTTTTATTAGACAATGTAGACATCAAGACACTGCAATTGAAATGGCTACGTGATCAAATTGGTTTAGTGAATCAAGAACCGGCTTTGTTTGCAACCACCATTTACGAAAACATTCTCTATGGCAAACCCGATGCCACGACGGCGGAGGTTGAAGCTGCCGCGGCTGCAGCCAATGCACATAGCTTTATCACGTTGCTCCCCAATGGCTACGATACCCAATTTCTAATCAAAACCCAGGTGGGGGAAAGAGGATTACAACTCTCCGGTGGACAAAAACAGAGAATCGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCTACTAGCGCTCTCGATGCAGGCTCTGAGAGCATAGTTCAAGAAGCTTTAGATCGTTTAATGGTCGGAAGAACAACGGTGGTAGTCGCACATCGATTATCAACCATCAGAAATGTTGATTCGATTGCAGTAATACAACAGGGGCAAGTCGTCGAAACAGGAACTCACGACGAACTAATCACCAAATCCGGTGCTTATTCTTCGTTAATCCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCGAATCCATCTACACGTCGAACACGATCGTCACGGCTTAGCCATTCATTATCAACAAAATCATTAAGCCTCCGCTCCGGCAGTCTCAGGAATTTGAGCTATTCGTATAGCACCGGTGCTGATGGCCGAATCGAAATGGTCTCGAACGCCGAAACCGATCGGAAAAACCCTGCCCCAGATGGCTATTTCCTTCGTCTTCTTAAACTCAACGGCCCTGAATGGCCGTATTCAATAATGGGCGCTGTTGGCTCTGTTCTCTCCGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGCAACATGATTGAGGTTTTCTATTACAGAAATTCATCCGCCATGGAAAGGAAAATCAAAGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTTGTAGCTTATCTAATTCAGCATTATTTCTTCACAATCATGGGCGAAAATCTCACAACCAGAGTCAGAAGAATGATGCTCGCAGCTATATTGAGGAATGAAGTCGGATGGTTCGATGAAGAAGAACACAACTCAAGTTTAGTAGCAGCAAGATTAGCAACTGATGCAGCTGATGTAAAATCCGCCATAGCTGAAAGAATATCAGTGATATTACAAAACATGACTTCACTTTTCACATCTTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTTCTCATCCTTGCAGCTTTCCCTCTACTTGTTCTTGCCAACATGGCTCAGCAACTTTCATTGAAAGGATTTGCTGGGGATACTGCAAAGGCCCACGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTAGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTTTGTTTCGCCATGAGCTTCGTGTCCCACAGCGACAGAGTCTCCGTCGAAGCCAAACGGCGGGGATTCTTTTTGGTATATCGCAGCTAGCTCTTTATGCTTCTGAAGCTTTAGTTTTGTGGTATGGTGTCCATTTGGTCAGCAATGGTGGATCAACATTTTCTAAAGTGATTAAAGTCTTTGTTGTCTTGGTTGTTACCGCCAATTCTGTGGCGGAAACTGTTAGTCTTGCTCCCGAGATCGTTAGGGGTGGTGAATCGATCGGTTCTGTTTTCTCAATTCTTGATCGCCCGACGAGGATTGACCCTGATGATCCTGAGGCAGAGACTGTTGAGACCCTTCGTGGAGAAATTGAACTACGACACGTTGACTTCGCATACCCATCTCGACCTGATGTCATGGTGTTTAAGGATCTCAATTTAAGAATCAGGGCTGGTCAGAGCCAGGCATTGGTTGGAGCTAGTGGATCAGGGAAGAGTTCAGTGATTGCGTTGATTGAAAGGTTCTACGATCCGCTTACCGGAAAAGTTATGATCGACGGGAAGGACATTCGACGCCTAAACTTACAATCGTTGAGGCTGAAAATTGGATTAGTACAACAAGAGCCAGCCTTATTTGCTGCCAGCATTTTTGATAACATTGCATATGGAAAAGATGGAGCAACAGAATCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTTCATGGCTTTGTTAGTGGACTGCCTGATGGATACAATACACCTGTTGGAGAAAGGGGAGTTCAGCTATCTGGTGGCCAAAAACAACGCATAGCTATTGCTAGGGCTGTTCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACTAGCGCCCTCGACGCCGAGTCCGAGTGTGTGCTGCAAGAGGCTCTCGAAAGGCTCATGAGGGGCCGAACCACGGTGGTTGTAGCACATCGCTTATCCACAATCAGGAGTGTGGACAGCATTGGTGTGGTCCAAGATGGGCGCATTGTCGAGCAAGGTAGCCATAACGAGCTGCTAAGCCGAGCCGAGGGGGCTTACTCAAGGCTTTTGCAGCTGCAACATCAACATATATGA 3930 44.89 MSYTNVPISLYKNPFSPRTSSFKSPLLQPLTTALTLTLNFISLSSSPVFPGPPMAEPVTEPKALPEPEKKKEQSLPFHQLFSFADKYDWFLMILGSFGAIIHGSSMPVFFLLFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIIQDPLDGKCLGEVNGNIEFKDVSFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYDTQFLIKTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHDELITKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIVRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLTGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATESEVIEAARAANVHGFVSGLPDGYNTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRSVDSIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI 1309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2201844 2208710 + MELO3C021982.2.1 Cme09g00284 337144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00284 1309 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1069 1303 IPR003439 GO:0005524
Cme09g00284 1309 SUPERFAMILY ABC transporter transmembrane region 732 1052 IPR036640 GO:0005524|GO:0016021
Cme09g00284 1309 SUPERFAMILY ABC transporter transmembrane region 80 402 IPR036640 GO:0005524|GO:0016021
Cme09g00284 1309 Pfam ABC transporter transmembrane region 92 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme09g00284 1309 Pfam ABC transporter transmembrane region 745 1016 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme09g00284 1309 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 416 658 IPR003439 GO:0005524
Cme09g00284 1309 Gene3D - 1057 1306 IPR027417 -
Cme09g00284 1309 Gene3D - 406 660 IPR027417 -
Cme09g00284 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1057 1305 IPR027417 -
Cme09g00284 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 659 IPR027417 -
Cme09g00284 1309 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 68 1307 - -
Cme09g00284 1309 ProSitePatterns ABC transporters family signature. 561 575 IPR017871 GO:0005524
Cme09g00284 1309 Gene3D ABC transporter type 1, transmembrane domain 79 1033 IPR036640 GO:0005524|GO:0016021
Cme09g00284 1309 CDD ABC_6TM_Pgp_ABCB1_D2_like 734 1050 - -
Cme09g00284 1309 ProSitePatterns ABC transporters family signature. 1206 1220 IPR017871 GO:0005524
Cme09g00284 1309 SMART AAA_5 443 641 IPR003593 -
Cme09g00284 1309 SMART AAA_5 1094 1266 IPR003593 -
Cme09g00284 1309 CDD ABC_MTABC3_MDL1_MDL2 1067 1305 - -
Cme09g00284 1309 CDD ABC_6TM_Pgp_ABCB1_D1_like 92 389 - -
Cme09g00284 1309 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 68 1307 IPR039421 -
Cme09g00284 1309 Gene3D ABC transporter type 1, transmembrane domain 1035 1307 IPR036640 GO:0005524|GO:0016021
Cme09g00284 1309 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 745 1032 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme09g00284 1309 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 93 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme09g00284 1309 Pfam ABC transporter 1086 1234 IPR003439 GO:0005524
Cme09g00284 1309 CDD ABC_MTABC3_MDL1_MDL2 416 659 - -
Cme09g00284 1309 Pfam ABC transporter 436 589 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02509 Cme-Chr4:31436975 Cme09g00284 Cme-Chr9:2201844 2.60E-07 dispersed
Cme04g02510 Cme-Chr4:31438390 Cme09g00284 Cme-Chr9:2201844 3.68E-14 dispersed
Cme09g00284 Cme-Chr9:2201844 Cme11g00691 Cme-Chr11:8174047 2.63E-88 dispersed
Cme11g00688 Cme-Chr11:8147997 Cme09g00284 Cme-Chr9:2201844 1.05E-91 dispersed
Cme01g02785 Cme-Chr1:34895480 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme02g00180 Cme-Chr2:1400425 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme03g00873 Cme-Chr3:16581383 Cme09g00284 Cme-Chr9:2201844 2.06E-61 transposed
Cme04g00136 Cme-Chr4:1017562 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme04g00825 Cme-Chr4:10306500 Cme09g00284 Cme-Chr9:2201844 4.02E-103 transposed
Cme04g02389 Cme-Chr4:30613471 Cme09g00284 Cme-Chr9:2201844 7.36E-42 transposed
Cme04g02513 Cme-Chr4:31442971 Cme09g00284 Cme-Chr9:2201844 8.68E-23 transposed
Cme05g01157 Cme-Chr5:18571865 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme08g00181 Cme-Chr8:1240462 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme08g01478 Cme-Chr8:13602575 Cme09g00284 Cme-Chr9:2201844 4.32E-07 transposed
Cme09g00314 Cme-Chr9:2625602 Cme09g00284 Cme-Chr9:2201844 3.65E-116 transposed
Cme09g00570 Cme-Chr9:5830550 Cme09g00284 Cme-Chr9:2201844 4.94E-88 transposed
Cme09g01469 Cme-Chr9:19890950 Cme09g00284 Cme-Chr9:2201844 1.01E-70 transposed
Cme09g01846 Cme-Chr9:22684006 Cme09g00284 Cme-Chr9:2201844 7.45E-11 transposed
Cme10g00604 Cme-Chr10:3862113 Cme09g00284 Cme-Chr9:2201844 9.47E-117 transposed
Cme10g00719 Cme-Chr10:4549694 Cme09g00284 Cme-Chr9:2201844 0 transposed
Cme11g01668 Cme-Chr11:24645008 Cme09g00284 Cme-Chr9:2201844 5.78E-07 transposed
Cme11g01674 Cme-Chr11:24724855 Cme09g00284 Cme-Chr9:2201844 1.22E-52 transposed
Cme11g01831 Cme-Chr11:26525306 Cme09g00284 Cme-Chr9:2201844 3.25E-06 transposed
Cme12g01928 Cme-Chr12:25302903 Cme09g00284 Cme-Chr9:2201844 3.16E-100 transposed
Cme12g01759 Cme-Chr12:24249736 Cme09g00284 Cme-Chr9:2201844 4.03E-10 wgd
Cme02g01898 Cme-Chr2:25457005 Cme09g00284 Cme-Chr9:2201844 3.19E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00284 K05658 - csv:101212585 2298.47