Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00288 ATGGCTTCTCCTCATCACCATTCCCATAGTTTCATGTTCCAATCCCGTCCCGCTCCCGATCATCATGAATACGTCCCCTCCGCTTCCTTCAACACCATCCCTTCCTGCCCTCCTCACCTCTACTTTCACGATGGGGTTGTTCCGGTGATGATGAAGAGATCGATGTCATTTTCGGGAGTTGAGAACGGGTGCGAGGATGTGAACGGCGACGAAGGGTTGTCGGACGACGGATTGGCGTTGGGAGAGAAGAAGAAGAGATTAAATTTAGAGCAAGTGAAGGCATTGGAGAAGAGTTTTGAGGTAGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAATTAGCCAAAGCATTGGGGTTGCAACCAAGACAAATTGCTATTTGGTTTCAGAACAGAAGAGCCAGATGGAAAACTAAGCAATTGGAAAGAGACTATGAGGTGTTGAAGAAACAGTTTGAAGCTCTTAAAGCTGACAATGATGTACTTCAAGCTCAAAATACCAAACTCCATGCAGAGTTATTAGCATTAAAAACCAAAGACTCCGGCGAGACAGTGGGGGGCGGCGGGGCCACCATGAACTTAAAGAAAGAAAACGAACGTTGTTGGAGCAGCGACAACAGTTGTGACATCAACCTCGACATCTCGAACACACAAACACCAATAGGCGGCGGTGGCGGAAGAGCATGTTCTCAACCAGGAATGATCAAAGATCTTTTCCCCTCCGCGGCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAACATGGGTCATCCCGATCAACGGTGGATCAACATCCTCAAGTGATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGCATTGAAGAACAACAACAAACTGCAGCAGCAGCTGGGTTTTGGCCATGGAGTTCGGATCAAAATTCTCATTTTCATTAA 915 47.21 MASPHHHSHSFMFQSRPAPDHHEYVPSASFNTIPSCPPHLYFHDGVVPVMMKRSMSFSGVENGCEDVNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTKDSGETVGGGGATMNLKKENERCWSSDNSCDINLDISNTQTPIGGGGGRACSQPGMIKDLFPSAAFRSAAITQLLQHGSSRSTVDQHPQVIQEESFSQMFNGIEEQQQTAAAAGFWPWSSDQNSHFH 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2286250 2289925 + MELO3C021978.2.1 Cme09g00288 337148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00288 304 Gene3D - 79 146 - -
Cme09g00288 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 304 IPR045224 GO:0003700
Cme09g00288 304 SUPERFAMILY Homeodomain-like 81 140 IPR009057 -
Cme09g00288 304 Pfam Homeobox associated leucine zipper 138 178 IPR003106 GO:0006355|GO:0043565
Cme09g00288 304 SMART HOX_1 81 142 IPR001356 GO:0003677
Cme09g00288 304 Coils Coil 130 171 - -
Cme09g00288 304 ProSiteProfiles 'Homeobox' domain profile. 82 138 IPR001356 GO:0003677
Cme09g00288 304 Pfam Homeodomain 83 136 IPR001356 GO:0003677
Cme09g00288 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 2 304 - -
Cme09g00288 304 CDD homeodomain 83 139 IPR001356 GO:0003677
Cme09g00288 304 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Cme09g00288 304 PRINTS Lambda-repressor HTH signature 109 118 IPR000047 GO:0003677
Cme09g00288 304 PRINTS Lambda-repressor HTH signature 118 134 IPR000047 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02449 Cme-Chr4:31086629 Cme09g00288 Cme-Chr9:2286250 1.33E-28 dispersed
Cme08g01238 Cme-Chr8:8830220 Cme09g00288 Cme-Chr9:2286250 1.01E-29 dispersed
Cme09g00288 Cme-Chr9:2286250 Cme09g00366 Cme-Chr9:3134032 3.99E-35 dispersed
Cme10g00433 Cme-Chr10:2749165 Cme09g00288 Cme-Chr9:2286250 5.83E-82 wgd
Cme12g01748 Cme-Chr12:24189271 Cme09g00288 Cme-Chr9:2286250 1.67E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41917 PF00046 Homeodomain 2.30E-15 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00288 K09338 - csv:101212093 612.838