Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme09g00295 ATGGGGGACAAAGATGAAGTATTGGAAGCTGTTGTGAAGGAAGCTGTTGATTTGGAGAACGTTCCACTTGAAGAGGTTTTTCAAACCTTGAGATGTAATAAAAATGGTTTGACAACAGAGGCTGCTCATGAGAGGTTGGCCATTTTTGGGCAAAACAAGCTTGAAGAAAAGAAGGAGAGTAAGGTTTTGAAGTTCTTGGGATTCATGTGGAACCCTCTCTCATGGGTCATGGAAGCTGCAGCTATAATGGCTATTGCTTTAGCTAATGGAGGAGGGAAACCTCCAGATTGGCAGGATTTTGTTGGGATCATAACTTTGTTACTTATCAATTCAACCATTAGTTTTATAGAGGAGAACAATGCTGGAAATGCTGCAGCTGCTCTCATGGCTCATCTTGCTCCGAAAGCTAAGGTTCTTAGAGATGGGAAGTGGGTCGAGGAGGAAGCATCAGTCCTTGTTCCTGGTGATATAATTAGCGTCAAGCTCGGTGATATTATTCCTGCTGATGCTCGCCTCCTTGAAGGTGATCCATTAAAGATCGATCAATCTGCTCTCACAGGTGAGTCGCTTCCTGTGACTAAAGGCCCCGGTGACAGTGTCTATTCAGGTTCAACATGCAAACAGGGAGAAATTGAAGCAGTGGTTATTGCTACCGGTGTTCATACATTCTTTGGCAAAGCTGCTCATCTTGTAGACTCCACGAATCAAGTGGGTCACTTCCAAAAGGTCTTGACTGCGATTGGAAATTTTTGCATATGTTCCATTGTTGTGGGTATGATTGTTGAGATTATTGTCATGTACCCAATCCAACATCGGCCGTACCGACCAGGGATCGACAATCTCCTAGTTCTCCTAATTGGAGGAATTCCCATTGCAATGCCAACTGTTTTGTCGGTCACAATGGCGATTGGATCACACCGTCTATCTGAACAGGGAGCCATCACTAAACGAATGACTGCGATAGAAGAAATGGCTGGAATGGACGTGCTTTGTAGTGACAAAACAGGAACACTGACCTTAAATAAGCTTACTGTTGACAAGACTCTGATAGAGGTTTTTGCTAAGGGAGTGGACGTGGATACTGTCGTTCTCATGGCAGCTCGAGCATCTCGAGTTGAAAATCAAGATGCAATTGATGCTGCTATAGTAGGGATGTTGAGTGATCCAAAAGAGGCACGAGCAGGCATTCAAGAGATTCACTTCCTTCCGTTCAACCCAACCGATAAGCGAACTGCCCTGACATACATTGATACCGATGGTAAAATGCATCGAGTCAGCAAAGGTGCTCCAGAGCAGATCTTGAATCTTGCACACAACAAATCAGAGATAGAAAGAAGAGTTCACGCTGTGATCGATAAGTTCGCAGAGCGAGGATTGCGCTCTCTTGCATTGGCATACCAACATCATCAATACATTCTACAGGAAGTTCCAGATGGAAGAAAGGAGAGTCATGGTGGGCCATGGCAATTCATTGGTCTAATGCCTCTGTTTGACCCACCTAGACATGATAGTGCAGAGACAATCAGGAGGGCTTTAAATCTTGGTGTAAATGTTAAAATGATCACAGGTGATCAACTGGCTATAGGAAAGGAAACAGGACGTCGGCTTGGGATGGGAACAAATATGTACCCTTCATCTGCATTATTAGGACAGAACAAAGATGAATCAATTTCTGGATTGCCTGTTGATGAGTTAATTGAAAAAGCTGATGGATTTGCTGGTGTATTTCCTGAGCACAAATATGAGATTGTGAAACGTTTACAAGCTCGGAAACATATATGTGGAATGACTGGAGATGGTGTTAATGATGCCCCTGCTCTTAAGAAGGCCGATATTGGCATAGCAGTTGCAGATGCAACTGATGCAGCTCGTAGTGCTTCTGACATTGTTCTTACTGAGCCTGGTCTTAGTGTTATTATAAGTGCCGTTCTAACCAGCCGAGCCATCTTCCAGAGGATGAAAAATTACACGATTTATGCCGTTTCAATTACAATTCGTATTGTGCTTGGATTCATGTTGCTGGCCCTTATATATCAATTTGACTTCCCACCTTTCATGGTTCTAATCATTGCTATTCTTAATGATGGTACCATAATGACAATATCGAAGGATAGAGTGAAACCGTCTCCTCTGCCTGATAGCTGGAAACTGGCAGAGATTTTTGGCACTGGAATTATACTTGGAGGTTATTTGGCTATGATGACCGTTATTTTCTTCTGGGCAGCTTACAAAACGGACTTCTTTCCTGTGAGTTTTAGTAATTTTGTCCACTCAGCAAAAGATTTAATTCCAGTGCGTACATTTGGGGTTTCTAGCCTTCAAAAGAAGGACGAGGATGATTTCAGAAAGCTAGCTTCAGCAATATACCTGCAAGTGAGTACAATTAGTCAGGCCCTCATCTTTGTGACAAGATCTCGAAGTTGGTCATTTGTGGAGCGTCCTGGCCTGTTATTGTTTGCAGCTTTTGTTATTGCTCAGCTAATTGCTACACTGATTGCCGTCTACGCAAACTGGAGTTTTGCCGCAATTGAAGGAATTGGCTGGGGTTGGGCTGGTGTAGTTTGGCTTTACAACCTCGTCTTTTATTTCCCACTTGACATAATCAAGTTTGCAATCAGATATGCCATTAGTGGTAGGGCATGGGACCTTGTCATTGAACAAAGGATTGCCTTTACAAGGAAGAAAGATTTTGGAAAGGAAGAGCGCGAGCTCAAATGGGCACATGCACAAAGGACACTTCATGGCCTGCAGCCACCTGAGGCTAAGATGTTCTCTGAGCGCACAACTTATACAGAACTCAATCAAATGGCAGAGGAAGCAAAACGTCGAGCTGAAATTGCTAGGCTGAGGGAGCTGCACACACTGAAAGGTCATGTCGAATCAGTGGTGAGGCTGAAAGGTCTTGACATCAACACGATTCAGCAGTCATACACAAAAGGGCACCGGAGTGCCATGCTTCTTGTTTACAATGGCCATGGCCATATAACGGGTGCCCATTCCAATGGGTGCCTCTTCATCAGGCCCCTCCCAGAAGGGTGCCTCACCTTCACCTACCAACCGCCAATATCCAGTCCTCAGAGACTCGGCCTGCTCATCTGTGCAATTTTCCAAAAGTGCCTCGACTCGAAAGTTGATGCCAAGCGAACCTAA 3150 44.29 MGDKDEVLEAVVKEAVDLENVPLEEVFQTLRCNKNGLTTEAAHERLAIFGQNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLLINSTISFIEENNAGNAAAALMAHLAPKAKVLRDGKWVEEEASVLVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIVVGMIVEIIVMYPIQHRPYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTLIEVFAKGVDVDTVVLMAARASRVENQDAIDAAIVGMLSDPKEARAGIQEIHFLPFNPTDKRTALTYIDTDGKMHRVSKGAPEQILNLAHNKSEIERRVHAVIDKFAERGLRSLALAYQHHQYILQEVPDGRKESHGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDESISGLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIYQFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFGTGIILGGYLAMMTVIFFWAAYKTDFFPVSFSNFVHSAKDLIPVRTFGVSSLQKKDEDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLFAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLVFYFPLDIIKFAIRYAISGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLQPPEAKMFSERTTYTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDINTIQQSYTKGHRSAMLLVYNGHGHITGAHSNGCLFIRPLPEGCLTFTYQPPISSPQRLGLLICAIFQKCLDSKVDAKRT 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2330877 2338022 - MELO3C021972.2.1 Cme09g00295 337155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme09g00295 1049 Coils Coil 930 950 - -
Cme09g00295 1049 PANTHER CALCIUM-TRANSPORTING ATPASE 3 959 - -
Cme09g00295 1049 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 835 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 514 524 - -
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 597 616 - -
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 620 632 - -
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Cme09g00295 1049 PRINTS P-type cation-transporting ATPase superfamily signature 492 503 - -
Cme09g00295 1049 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 875 IPR023298 -
Cme09g00295 1049 SFLD p-type atpase 313 648 IPR044492 -
Cme09g00295 1049 Gene3D - 96 844 - -
Cme09g00295 1049 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Cme09g00295 1049 PANTHER PLASMA MEMBRANE ATPASE 3 959 - -
Cme09g00295 1049 Pfam haloacid dehalogenase-like hydrolase 327 611 - -
Cme09g00295 1049 Pfam E1-E2 ATPase 132 310 - -
Cme09g00295 1049 Gene3D - 343 497 IPR023299 GO:0000166
Cme09g00295 1049 PRINTS H+-transporting ATPase (proton pump) signature 569 585 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 PRINTS H+-transporting ATPase (proton pump) signature 789 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 PRINTS H+-transporting ATPase (proton pump) signature 628 653 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 PRINTS H+-transporting ATPase (proton pump) signature 597 613 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 572 680 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 103 351 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme09g00295 1049 CDD P-type_ATPase_H 36 870 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme09g00295 1049 Gene3D - 928 978 - -
Cme09g00295 1049 Gene3D - 328 634 IPR023214 -
Cme09g00295 1049 Gene3D - 134 218 - -
Cme09g00295 1049 SUPERFAMILY HAD-like 327 644 IPR036412 -
Cme09g00295 1049 SFLD C1.7: P-type atpase like 313 648 - -
Cme09g00295 1049 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Cme09g00295 1049 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Cme09g00295 1049 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01065 Cme-Chr7:13139218 Cme09g00295 Cme-Chr9:2330877 5.63E-20 transposed
Cme12g01744 Cme-Chr12:24163351 Cme09g00295 Cme-Chr9:2330877 0 wgd
Cme02g01909 Cme-Chr2:25521866 Cme09g00295 Cme-Chr9:2330877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme09g00295 K01535 - csv:101211115 1771.52